Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D05
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   1.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   3.8  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    24   5.1  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 145 LVASGDIIPKRILAIYRGVAKTSK 216
           LV+   ++PKR+L +Y  + +T+K
Sbjct: 284 LVSQSTVVPKRLLKVYPLIEQTAK 307


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 218 KFNYSSAYYIFKLYFYLYD 274
           +F YSS Y  F+L+  LY+
Sbjct: 743 QFGYSSMYVFFRLFNLLYE 761


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 10  TKEDMVVTKEDMVVTKEDMV-VTKEVMV 90
           +KE+  +T+ DMV++ E+ V VT ++ V
Sbjct: 437 SKEEKTLTEADMVISSEETVTVTNDLEV 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,229
Number of Sequences: 5004
Number of extensions: 14535
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)