Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D05
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686...    27   3.5  
01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455     27   4.6  
05_01_0040 - 273384-273437,273920-274102,274465-274677,275479-27...    26   8.0  

>04_04_1019 +
           30166514-30166585,30167207-30167841,30168505-30168645,
           30169604-30170300
          Length = 514

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 152 PVGILSPSEFWQFIEGWQKPVNKFNYSSAYY 244
           P G + PS+ W + +  QKP+    Y   YY
Sbjct: 256 PSGEVVPSDLWAWRKYGQKPIKGSPYPRGYY 286


>01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455
          Length = 249

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 106 VIHLDMVIILEEALVASGDIIPKRIL 183
           V HLD  ++ +E + A  D++P R++
Sbjct: 52  VEHLDHAVLYQERVAARPDVVPSRLV 77


>05_01_0040 -
           273384-273437,273920-274102,274465-274677,275479-276294,
           276431-276823,277233-277238
          Length = 554

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +3

Query: 186 NLSRGGKNQ*INLIIAR 236
           N+SRGG+N+ +N+I +R
Sbjct: 253 NISRGGRNEQVNIISSR 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,914,136
Number of Sequences: 37544
Number of extensions: 77119
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)