Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D05
(326 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56963-12|AAB38128.1| 341|Caenorhabditis elegans Serpentine rec... 29 0.79
Z74029-2|CAA98432.1| 334|Caenorhabditis elegans Hypothetical pr... 28 1.8
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 27 3.2
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 27 3.2
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 27 3.2
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 27 4.2
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 26 7.4
Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z68215-16|CAD59144.1| 458|Caenorhabditis elegans Hypothetical p... 25 9.7
Z68160-5|CAA92293.2| 458|Caenorhabditis elegans Hypothetical pr... 25 9.7
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 25 9.7
AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative tran... 25 9.7
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 25 9.7
>U56963-12|AAB38128.1| 341|Caenorhabditis elegans Serpentine
receptor, class v protein33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 310 LSIIYYFINCLPIIQIKV*LKNIICRAIIKFIYWFLP 200
LS+ YF+ C P++Q ++N + I IYW +P
Sbjct: 115 LSLQRYFVICCPMLQFTYKIQN-ASKLTIVVIYWIVP 150
>Z74029-2|CAA98432.1| 334|Caenorhabditis elegans Hypothetical
protein C45B11.4 protein.
Length = 334
Score = 27.9 bits (59), Expect = 1.8
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = -2
Query: 304 IIYYFINCLPII 269
++YYF+NC+PI+
Sbjct: 152 VVYYFLNCIPIV 163
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 183 QNSLGDNIPTGHQSLLQYYYHIQMDYQILLDYHN 82
QN G+ PT HQ ++ YY + ++ +HN
Sbjct: 16 QNEEGNYDPTDHQRQMEDYYKQYEEQRVANSFHN 49
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 183 QNSLGDNIPTGHQSLLQYYYHIQMDYQILLDYHN 82
QN G+ PT HQ ++ YY + ++ +HN
Sbjct: 16 QNEEGNYDPTDHQRQMEDYYKQYEEQRVANSFHN 49
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 183 QNSLGDNIPTGHQSLLQYYYHIQMDYQILLDYHN 82
QN G+ PT HQ ++ YY + ++ +HN
Sbjct: 16 QNEEGNYDPTDHQRQMEDYYKQYEEQRVANSFHN 49
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 121 MVIILEEALVASGDIIPKRILAI 189
+V I +E L GD +PKRILA+
Sbjct: 919 LVDIYKERLRKPGDFVPKRILAL 941
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 183 QNSLGDNIPTGHQSLLQ-YYYHIQMDYQILLDYHN 82
QN G+ PT HQ ++ YY + Q+ +HN
Sbjct: 16 QNEEGNYDPTDHQRQMEDYYKQYEEQRQVANSFHN 50
>Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical
protein C15C8.2 protein.
Length = 636
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -3
Query: 219 LFTGFCHPSINCQNSLGDNIPTGHQSLLQYYYHIQMDYQ 103
+F+ +C P IN +N+ G + TG+ + +++ M ++
Sbjct: 280 VFSAYCQPLINPENAEG--MSTGNTHVFSTQHYLDMKFK 316
>Z68215-16|CAD59144.1| 458|Caenorhabditis elegans Hypothetical
protein D1046.5 protein.
Length = 458
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = -2
Query: 310 LSIIYYFINCLPII 269
L+++Y+FI CLP++
Sbjct: 235 LALVYFFIMCLPLV 248
>Z68160-5|CAA92293.2| 458|Caenorhabditis elegans Hypothetical
protein D1046.5 protein.
Length = 458
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = -2
Query: 310 LSIIYYFINCLPII 269
L+++Y+FI CLP++
Sbjct: 235 LALVYFFIMCLPLV 248
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 176 EFWQFIEGWQKPVNKFNYSSAYYIFKLYFYL 268
E WQFI G P +K Y++ ++ F L
Sbjct: 155 EIWQFIAGSPPPFSKIVLILMYFVPQMLFNL 185
>AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative
transcription factor C15C8.2protein.
Length = 636
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -3
Query: 219 LFTGFCHPSINCQNSLGDNIPTGHQSLLQYYYHIQMDYQ 103
+F+ +C P IN +N+ G + TG+ + +++ M ++
Sbjct: 280 VFSAYCQPLINPENAEG--MSTGNTHVFSTQHYLDMKFK 316
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -3
Query: 219 LFTGFCHPSINCQNSLGDNIPTGHQSLLQYYYHIQMDYQ 103
+F+ +C P IN +N+ G + TG+ + +++ M ++
Sbjct: 280 VFSAYCQPLINPENAEG--MSTGNTHVFSTQHYLDMKFK 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,506,781
Number of Sequences: 27780
Number of extensions: 76642
Number of successful extensions: 232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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