Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D04
         (318 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E467F1 Cluster: PREDICTED: similar to 26S protea...    64   8e-10
UniRef50_P17980 Cluster: 26S protease regulatory subunit 6A; n=1...    41   0.006
UniRef50_A0BU19 Cluster: Chromosome undetermined scaffold_128, w...    33   0.93 
UniRef50_UPI000150A199 Cluster: hypothetical protein TTHERM_0048...    32   2.1  
UniRef50_Q23CU5 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_UPI00004984D8 Cluster: protein with RhoGEF and ArfGAP d...    31   6.6  
UniRef50_A5ITY8 Cluster: Putative uncharacterized protein precur...    31   6.6  
UniRef50_A0D458 Cluster: Chromosome undetermined scaffold_37, wh...    30   8.7  
UniRef50_Q5ASH7 Cluster: Putative uncharacterized protein; n=1; ...    30   8.7  

>UniRef50_UPI0000E467F1 Cluster: PREDICTED: similar to 26S protease
           regulatory subunit 6a, partial; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to 26S protease
           regulatory subunit 6a, partial - Strongylocentrotus
           purpuratus
          Length = 79

 Score = 63.7 bits (148), Expect = 8e-10
 Identities = 29/36 (80%), Positives = 32/36 (88%)
 Frame = +2

Query: 62  ATTLEDKSIWEDGEEALSEEVLRMPTDEIISRTRLL 169
           AT LEDKSIWEDGE+++ EEVLRM TDEII RTRLL
Sbjct: 3   ATNLEDKSIWEDGEDSVGEEVLRMSTDEIIGRTRLL 38


>UniRef50_P17980 Cluster: 26S protease regulatory subunit 6A; n=154;
           Eukaryota|Rep: 26S protease regulatory subunit 6A - Homo
           sapiens (Human)
          Length = 439

 Score = 40.7 bits (91), Expect = 0.006
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = +2

Query: 83  SIWEDGEE-ALSEEVLRMPTDEIISRTRLL*QR-KLRISEKANVXEEFSHETIKASKRQN 256
           ++W++ E+  + EEVL+M T+EII RTRLL    K+  SE   V  E   + +K   ++N
Sbjct: 19  TVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHEL--QAMKDKIKEN 76

Query: 257 KRK 265
             K
Sbjct: 77  SEK 79



 Score = 38.7 bits (86), Expect = 0.025
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +3

Query: 225 TKQSRLQNDKIKENTEKIKVNKTLP 299
           T + +   DKIKEN+EKIKVNKTLP
Sbjct: 63  THELQAMKDKIKENSEKIKVNKTLP 87


>UniRef50_A0BU19 Cluster: Chromosome undetermined scaffold_128,
           whole genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_128,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 800

 Score = 33.5 bits (73), Expect = 0.93
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
 Frame = +3

Query: 102 KKRLARKSFVCLLMK-SSAVQDSCDNEN*-----E*VKKRTSXRNFPTKQSRLQNDKIK- 260
           K++  RK+F  L +  +SA+   CDNE       E + KR    +F TKQ  L++DK+K 
Sbjct: 607 KQKKKRKTFEDLQLNITSAIDYMCDNETLSEGMNESILKRYGYVDFQTKQQTLEDDKLKS 666

Query: 261 -ENTEKIKVN 287
            +  +K+++N
Sbjct: 667 LKVIQKLQLN 676


>UniRef50_UPI000150A199 Cluster: hypothetical protein
           TTHERM_00481320; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00481320 - Tetrahymena
           thermophila SB210
          Length = 363

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 288 CSL*FSPCFLLFCRFEALIVSWENSSMTFAFSLILNFRCHRSL 160
           C   F+P    +C+       ++N   TF F L  NF CH SL
Sbjct: 241 CQCGFNPGSFSYCKLSEGDQEYKNVLQTFLFVLNTNFHCHTSL 283


>UniRef50_Q23CU5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2086

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +3

Query: 102 KKRLARKSF-VCLLMKSSAVQDSCDNEN*E*VKKRTSXRNFPTKQSRLQNDKIKENTEKI 278
           KK++++K+  +  +  SS   +S  N+N   +K   S RNF T+ SR Q+D+ K N  +I
Sbjct: 226 KKQISQKARPISAIQASSNTYNSQPNQN---LKNYESHRNFVTRDSRNQSDE-KANQREI 281

Query: 279 KVNK 290
             N+
Sbjct: 282 VYNE 285


>UniRef50_UPI00004984D8 Cluster: protein with RhoGEF and ArfGAP
           domains; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
           protein with RhoGEF and ArfGAP domains - Entamoeba
           histolytica HM-1:IMSS
          Length = 997

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 92  EDGEEALSEEVLRMPTDEIISRTRLL*QRKLRISEKANVXEEFSHETIKASKRQNKR 262
           ++ +   +EEV  + T +  S+TR      L I ++ N  EE     IK SK  N++
Sbjct: 165 KENKPCQTEEVKGIETKKKYSKTRKTQSENLSIIKETNTEEEIKSSIIKESKELNQK 221


>UniRef50_A5ITY8 Cluster: Putative uncharacterized protein
           precursor; n=4; Staphylococcus aureus subsp. aureus|Rep:
           Putative uncharacterized protein precursor -
           Staphylococcus aureus subsp. aureus JH9
          Length = 164

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 120 KSFVCLLMKSSAVQDSCDNEN*E*VKKRTSXRNFPTKQSRLQNDKIKENTEKIKVNK 290
           +  + LL+ S+ +  +C N N E  KK    ++   K++   NDK K   +   +NK
Sbjct: 2   RRLLSLLLASTMILVACGNANNENKKKEDEKKSEVKKEATKNNDKPKNEKKNQDINK 58


>UniRef50_A0D458 Cluster: Chromosome undetermined scaffold_37, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_37,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 728

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 198 KRTSXRNFPTKQSRLQNDKIKENTEKIKVNKTL 296
           KR S R+F  ++  L N  I E  ++IKVN+ +
Sbjct: 541 KRNSPRSFTKQRQNLNNSAIPEQKQEIKVNEQI 573


>UniRef50_Q5ASH7 Cluster: Putative uncharacterized protein; n=1;
           Emericella nidulans|Rep: Putative uncharacterized
           protein - Emericella nidulans (Aspergillus nidulans)
          Length = 859

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
 Frame = +3

Query: 81  SPFGR----MEKKRLARKSFVC---LLMKSSAVQDSCDNEN*E*VKKRTSXRNFPTKQSR 239
           SPF R    MEK R+   S +      + S     S   +N   V+ R +      KQS+
Sbjct: 102 SPFARYLVGMEKIRIPSPSAILNPLAALSSGGSTGSDSTQNAAPVQSRVTTTTNKPKQSK 161

Query: 240 LQNDKIKENTEKIKVNKTLPTCFQ 311
            +N  +    +++K +++ PTC Q
Sbjct: 162 SRNGCVTCKAKRLKCDESKPTCLQ 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,987,934
Number of Sequences: 1657284
Number of extensions: 4501462
Number of successful extensions: 11709
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11701
length of database: 575,637,011
effective HSP length: 82
effective length of database: 439,739,723
effective search space used: 10114013629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)