Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D04
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 28 0.39
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 27 0.69
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 0.69
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 1.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 1.2
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 3.7
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 3.7
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 24 4.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 24 4.8
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 24 6.4
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.4
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 24 6.4
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 24 6.4
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 6.4
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 24 6.4
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 24 6.4
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 23 8.5
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 23 8.5
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 0.39
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 95 DGEEALSEEVLRMPTDEIISRTRLL*QR-KLRISEKANVXEEFSHETIKASKRQNK 259
+G + + +E+L DE+ SRTRLL K+ SE + E S K + Q K
Sbjct: 22 EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEK 77
Score = 27.9 bits (59), Expect = 0.39
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 225 TKQSRLQNDKIKENTEKIKVNKTLP 299
T + +KIKEN EKI NK LP
Sbjct: 61 THEKSTMLEKIKENQEKISNNKMLP 85
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 27.1 bits (57), Expect = 0.69
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 267 CFLLFCRFEALIVSWENSSMTFA 199
C+L F F+A V W+NS F+
Sbjct: 505 CYLKFSPFDASTVDWKNSKEAFS 527
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 0.69
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 71 LEDKSIWEDGEEALSEEVLRMPTDEII-SRTRLL*QRKLRISEKANVXEEFSHETIKASK 247
+E+K +ED + +S + TD+++ + +RKL + +K +EF IK K
Sbjct: 24 IEEKKRYEDEKRKISHQKY---TDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIK--K 78
Query: 248 RQNKRKHGEN*SEQ 289
R+++ + G +EQ
Sbjct: 79 RKDEERKGTLKTEQ 92
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 122 VLRMPTDEIISRTRLL*QRKLRISEKANVXEEFSHETI 235
+ R P E +S+ + ++ S K N+ E+F HE +
Sbjct: 1595 IQRFPVSEWVSKLDTHVRNCIKFSHKQNLEEDFIHEPV 1632
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 1.2
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 89 WEDGEEALSEEVLRMPTDEIISRTRLL*QRKLRISEKANVXEEFSHETIKASKRQNKRK 265
+E E L + +M + I+ +R L R+S +N S K+SKR+ R+
Sbjct: 113 YEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNASATASKNGAKSSKRKTTRR 171
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 86 IWEDGEEALSEEVLRMPTDEIISRT 160
++ DGE+ L E+ ++PT+ I S T
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTT 348
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 3.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 173 QRKLRISEKANVXEEFSHETIKASKRQNKRKHGEN*SEQNTT 298
QR+LR E + +FS++ AS R + + SEQ+T+
Sbjct: 336 QRELR--EARRIIPQFSYDPPGASGRNRRERTSSTPSEQSTS 375
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 24.2 bits (50), Expect = 4.8
Identities = 8/32 (25%), Positives = 15/32 (46%)
Frame = -1
Query: 267 CFLLFCRFEALIVSWENSSMTFAFSLILNFRC 172
C+ L + +SW +A+ +NF+C
Sbjct: 1568 CYHLLRNDLVMEISWRKGLQDYAYPYFINFQC 1599
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 225 TKQSRLQNDKIKENTEKIKVN 287
TKQ + +KEN+EK K N
Sbjct: 350 TKQLHVAESTLKENSEKFKQN 370
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 71 LEDKSIWEDGEEALSEEVLR 130
+ED++I +DGE A++E+ R
Sbjct: 152 IEDENIIDDGETAINEQKKR 171
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 80 KSIWEDGEEALSEEVLRMPTDEIISRT 160
K+I D E L+EEVL TD+ ++ T
Sbjct: 285 KNILNDDELHLTEEVLSFLTDDPVTLT 311
>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 242
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = -2
Query: 203 SLFHLFLIFVVTGVLY 156
++FH+FL F++T +LY
Sbjct: 76 AIFHIFLPFILTLLLY 91
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 23.8 bits (49), Expect = 6.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 192 VKKRTSXRNFPTKQSRLQNDKIKENTEKIKVNKTLP 299
+K R NFPT +S QN E + + TLP
Sbjct: 41 IKVRQQTYNFPTIRSCFQNAVKNEGLKGLYRGLTLP 76
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = -2
Query: 203 SLFHLFLIFVVTGVLY 156
++FH+FL F++T +LY
Sbjct: 76 AIFHIFLPFILTLLLY 91
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 23.8 bits (49), Expect = 6.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 198 KRTSXRNFPTKQS-RLQNDKIKENTEKIK-VNKTL 296
KR F KQ +LQN+ K++ EKIK NK L
Sbjct: 170 KRHFSELFTQKQMLQLQNENFKDDYEKIKEENKRL 204
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 50 QITMATTLEDKSIWEDGEEALSEEVLRMPTDEIISR 157
Q ++ L+ SI+ DG+E +S PT I+ +
Sbjct: 72 QTMISPLLQSLSIYTDGKERISTSAWDQPTVNIMHK 107
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 23.4 bits (48), Expect = 8.5
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 92 EDGEEALSEEVLRM-PTDEIISRTRLL*QRKLRISEKAN--VXEEFSHETIKASKRQNKR 262
ED EE S+E + PT+E + T + SE + EE ++ A K Q K+
Sbjct: 126 EDEEEEESDEDYDLSPTEEDLVETVSGDEESEEESESEDNSASEEDELDSAPAKKAQVKK 185
Query: 263 KHGEN*SEQ 289
K ++ SEQ
Sbjct: 186 KRTKDESEQ 194
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 258 KENTEKIKVNKTLPT 302
+ENT +K KTLPT
Sbjct: 105 EENTSSVKRQKTLPT 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,630
Number of Sequences: 5004
Number of extensions: 21075
Number of successful extensions: 78
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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