Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D04
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0511 + 3688788-3688880,3689050-3689166,3689959-3690066,369... 31 0.20
02_05_1126 - 34284733-34284810,34285151-34285291,34285424-342855... 31 0.20
04_03_0684 - 18670697-18670933,18671003-18671102,18671214-186712... 29 0.60
09_02_0289 - 6941154-6941399,6941630-6941722,6941801-6941884,694... 27 3.2
08_02_0232 - 14584952-14586451 27 4.2
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 27 4.2
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 26 7.4
08_02_0294 - 15432424-15432669,15433007-15433099,15433168-154332... 26 7.4
08_01_0883 + 8672020-8672193,8672343-8672458,8672604-8672756,867... 25 9.7
05_07_0335 - 29363504-29363583,29363783-29363966 25 9.7
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 25 9.7
02_01_0403 - 2938242-2941334 25 9.7
>06_01_0511 +
3688788-3688880,3689050-3689166,3689959-3690066,
3690634-3690825,3691010-3691201,3691484-3691602,
3691740-3691827,3692155-3692274,3692378-3692518,
3693065-3693142
Length = 415
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 249 DKIKENTEKIKVNKTLP 299
+KIKEN EKIK+NK LP
Sbjct: 46 EKIKENQEKIKLNKQLP 62
>02_05_1126 -
34284733-34284810,34285151-34285291,34285424-34285543,
34285787-34285874,34285962-34286080,34286437-34286628,
34286802-34286993,34287309-34287416,34287983-34288099,
34288214-34288315
Length = 418
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 249 DKIKENTEKIKVNKTLP 299
+KIKEN EKIK+NK LP
Sbjct: 49 EKIKENQEKIKLNKQLP 65
>04_03_0684 -
18670697-18670933,18671003-18671102,18671214-18671266,
18671664-18671810,18671901-18672031,18673064-18673088,
18673201-18673305,18673941-18674054,18674900-18674992,
18675101-18675193,18675951-18676057,18676442-18676490,
18677140-18677253,18677728-18677787,18677887-18677955,
18679154-18679255,18679338-18679366,18679450-18679732,
18680399-18680752
Length = 754
Score = 29.5 bits (63), Expect = 0.60
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 104 EALSEEVLRMPTDEIISRTRLL*QRKLRISEKAN-VXEEFSHETIKASK 247
E L +E+LR TDE+I R + + Q L++ E+A+ EEFS E K K
Sbjct: 644 ENLLDEMLR-ETDEVIIRRQRI-QETLQVLEQAHRTLEEFSLEAEKVEK 690
>09_02_0289 -
6941154-6941399,6941630-6941722,6941801-6941884,
6947011-6947146,6947310-6947455,6947826-6948051,
6948595-6948677,6949004-6949198,6949276-6949374,
6949762-6949875,6949949-6950036,6950353-6950558,
6950850-6950902,6951074-6951377,6952195-6952283,
6952675-6953052,6953665-6953726,6954124-6954189,
6955126-6955205
Length = 915
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 160 CTADDFISRHTKDFLAKRFFSILPN 86
CTAD +++ H D+L K I PN
Sbjct: 647 CTADTYVACHYYDWLKKGIHVITPN 671
>08_02_0232 - 14584952-14586451
Length = 499
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 231 VSWENSSMTFAFSLILNFRCHRSLVRLMISSV 136
V E+ S T F +LN CH S+++L + S+
Sbjct: 277 VDLESISGTATFGPLLNTMCHISILKLTVYSI 308
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 26.6 bits (56), Expect = 4.2
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 74 EDKSIWEDGEEALSEEVLRMPTDEIISRTRLL*QRKLRISEKANVXEE----FSHETIKA 241
ED + +GEE E L + + + L Q K++ISEK+N+ EE + T KA
Sbjct: 372 EDWELATNGEEMSKLEALLLDKNRKMEHE--LTQLKVKISEKSNLLEEAEKKIAELTAKA 429
Query: 242 SKRQ 253
++Q
Sbjct: 430 EEQQ 433
>10_08_0765 -
20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 83 SIWEDGEEALSEEVLRMPTDEIISRTRLL*QRKLRISEKANVXEEF 220
S+W+ + LSE VL D+I+++ LL + +I E + E++
Sbjct: 61 SLWQWRSQGLSEVVLSWSVDQILNKD-LLRDKVAKIPETFSSMEQY 105
>08_02_0294 -
15432424-15432669,15433007-15433099,15433168-15433251,
15434311-15434446,15434601-15434746,15435017-15435242,
15435885-15435967,15436867-15437061,15437148-15437246,
15438237-15438350,15438424-15438511,15438790-15438995,
15439306-15439358,15440473-15440776,15441278-15441366,
15441584-15441958,15442382-15442446,15442945-15442970,
15444007-15444225
Length = 948
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 160 CTADDFISRHTKDFLAKRFFSILPN 86
CTAD ++ H D+L K I PN
Sbjct: 680 CTADTSVASHYYDWLKKGIHVITPN 704
>08_01_0883 +
8672020-8672193,8672343-8672458,8672604-8672756,
8672868-8673195,8673250-8673480,8673567-8673707,
8673805-8674002,8674467-8674754
Length = 542
Score = 25.4 bits (53), Expect = 9.7
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 41 ENTQITMATTLEDKSIWEDGEEALSEEVLRMPTDEIISRTRLL*QR-KLRISEKANVXEE 217
E T I +AT L+ ++ + + S E L+ + TRLL +R K R + +A++ +
Sbjct: 132 EETDI-LATQLKASQLYSV-DSSKSNEELQSKGQVFVRSTRLLERRSKRRYAPRASIAD- 188
Query: 218 FSHETIKASKRQNKRKHG 271
S + K++ +K+G
Sbjct: 189 VSCSADNSKKKEKSKKYG 206
>05_07_0335 - 29363504-29363583,29363783-29363966
Length = 87
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 47 TQITMATTLEDKSIWEDGEEALSEEVLRMPTDEIISRTR 163
TQIT+ T ED +W + L + ++++IS+ R
Sbjct: 42 TQITLIETGEDNIVWTRNAAGALLKTLIIYSEDVISQIR 80
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +2
Query: 98 GEEALSEEVLRMPTDEIISRTRLL*QRKLRISEKANVXEEFSHETIKASKRQNKRKHGE 274
GE+ EE R E R R +RK R E+ E E + K + KR+ E
Sbjct: 479 GEKEREEEERRQREKEEEERRRQEEERKRREEEEKERREREEEERRQREKEEKKRREEE 537
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 213 RNFPTKQSRLQNDKIKENTEKIKVNKTL 296
+NF T+ R +ND +E IK +TL
Sbjct: 696 KNFVTENRRCRNDGTEETLSNIKSEQTL 723
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,985,374
Number of Sequences: 37544
Number of extensions: 112284
Number of successful extensions: 251
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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