Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D04
(318 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC107804-1|AAI07805.1| 491|Homo sapiens PSMC3 protein protein. 41 7e-04
BC106920-1|AAI06921.1| 439|Homo sapiens proteasome (prosome, ma... 41 7e-04
BC073165-1|AAH73165.3| 439|Homo sapiens proteasome (prosome, ma... 41 7e-04
BC008713-1|AAH08713.4| 439|Homo sapiens proteasome (prosome, ma... 41 7e-04
AK222485-1|BAD96205.1| 424|Homo sapiens proteasome 26S ATPase s... 41 7e-04
M34079-1|AAA36666.1| 404|Homo sapiens protein ( Human immunodef... 39 0.004
CR456731-1|CAG33012.1| 404|Homo sapiens PSMC3 protein. 39 0.004
BC103982-1|AAI03983.1| 337|Homo sapiens zinc finger, DHHC-type ... 27 9.1
BC103981-1|AAI03982.1| 337|Homo sapiens zinc finger, DHHC-type ... 27 9.1
BC103980-1|AAI03981.1| 337|Homo sapiens zinc finger, DHHC-type ... 27 9.1
AL137013-4|CAI40090.1| 337|Homo sapiens novel protein protein. 27 9.1
AK056374-1|BAB71168.1| 337|Homo sapiens protein ( Homo sapiens ... 27 9.1
>BC107804-1|AAI07805.1| 491|Homo sapiens PSMC3 protein protein.
Length = 491
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 SIWEDGEE-ALSEEVLRMPTDEIISRTRLL*QR-KLRISEKANVXEEFSHETIKASKRQN 256
++W++ E+ + EEVL+M T+EII RTRLL K+ SE V E + +K ++N
Sbjct: 71 TVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHEL--QAMKDKIKEN 128
Query: 257 KRK 265
K
Sbjct: 129 SEK 131
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 225 TKQSRLQNDKIKENTEKIKVNKTLP 299
T + + DKIKEN+EKIKVNKTLP
Sbjct: 115 THELQAMKDKIKENSEKIKVNKTLP 139
>BC106920-1|AAI06921.1| 439|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 3 protein.
Length = 439
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 SIWEDGEE-ALSEEVLRMPTDEIISRTRLL*QR-KLRISEKANVXEEFSHETIKASKRQN 256
++W++ E+ + EEVL+M T+EII RTRLL K+ SE V E + +K ++N
Sbjct: 19 TVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHEL--QAMKDKIKEN 76
Query: 257 KRK 265
K
Sbjct: 77 SEK 79
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 225 TKQSRLQNDKIKENTEKIKVNKTLP 299
T + + DKIKEN+EKIKVNKTLP
Sbjct: 63 THELQAMKDKIKENSEKIKVNKTLP 87
>BC073165-1|AAH73165.3| 439|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 3 protein.
Length = 439
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 SIWEDGEE-ALSEEVLRMPTDEIISRTRLL*QR-KLRISEKANVXEEFSHETIKASKRQN 256
++W++ E+ + EEVL+M T+EII RTRLL K+ SE V E + +K ++N
Sbjct: 19 TVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHEL--QAMKDKIKEN 76
Query: 257 KRK 265
K
Sbjct: 77 SEK 79
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 225 TKQSRLQNDKIKENTEKIKVNKTLP 299
T + + DKIKEN+EKIKVNKTLP
Sbjct: 63 THELQAMKDKIKENSEKIKVNKTLP 87
>BC008713-1|AAH08713.4| 439|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 3 protein.
Length = 439
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 SIWEDGEE-ALSEEVLRMPTDEIISRTRLL*QR-KLRISEKANVXEEFSHETIKASKRQN 256
++W++ E+ + EEVL+M T+EII RTRLL K+ SE V E + +K ++N
Sbjct: 19 TVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHEL--QAMKDKIKEN 76
Query: 257 KRK 265
K
Sbjct: 77 SEK 79
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 225 TKQSRLQNDKIKENTEKIKVNKTLP 299
T + + DKIKEN+EKIKVNKTLP
Sbjct: 63 THELQAMKDKIKENSEKIKVNKTLP 87
>AK222485-1|BAD96205.1| 424|Homo sapiens proteasome 26S ATPase
subunit 3 variant protein.
Length = 424
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 SIWEDGEE-ALSEEVLRMPTDEIISRTRLL*QR-KLRISEKANVXEEFSHETIKASKRQN 256
++W++ E+ + EEVL+M T+EII RTRLL K+ SE V E + +K ++N
Sbjct: 4 TVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHEL--QAMKDKIKEN 61
Query: 257 KRK 265
K
Sbjct: 62 SEK 64
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 225 TKQSRLQNDKIKENTEKIKVNKTLP 299
T + + DKIKEN+EKIKVNKTLP
Sbjct: 48 THELQAMKDKIKENSEKIKVNKTLP 72
>M34079-1|AAA36666.1| 404|Homo sapiens protein ( Human
immunodeficiency virus tat transactivator binding
protein-1 (tbp-1) mRNA, complete cds. ).
Length = 404
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 225 TKQSRLQNDKIKENTEKIKVNKTLP 299
T + + DKIKEN+EKIKVNKTLP
Sbjct: 28 THELQAMKDKIKENSEKIKVNKTLP 52
>CR456731-1|CAG33012.1| 404|Homo sapiens PSMC3 protein.
Length = 404
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 225 TKQSRLQNDKIKENTEKIKVNKTLP 299
T + + DKIKEN+EKIKVNKTLP
Sbjct: 28 THELQAMKDKIKENSEKIKVNKTLP 52
>BC103982-1|AAI03983.1| 337|Homo sapiens zinc finger, DHHC-type
containing 15 protein.
Length = 337
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 266 VFFYFVVLKP*LFRGKIPX*RSLFH-LFLIFV 174
VF YF+ +RG++P RS FH LFL+FV
Sbjct: 192 VFSYFIKY----WRGELPSVRSKFHVLFLLFV 219
>BC103981-1|AAI03982.1| 337|Homo sapiens zinc finger, DHHC-type
containing 15 protein.
Length = 337
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 266 VFFYFVVLKP*LFRGKIPX*RSLFH-LFLIFV 174
VF YF+ +RG++P RS FH LFL+FV
Sbjct: 192 VFSYFIKY----WRGELPSVRSKFHVLFLLFV 219
>BC103980-1|AAI03981.1| 337|Homo sapiens zinc finger, DHHC-type
containing 15 protein.
Length = 337
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 266 VFFYFVVLKP*LFRGKIPX*RSLFH-LFLIFV 174
VF YF+ +RG++P RS FH LFL+FV
Sbjct: 192 VFSYFIKY----WRGELPSVRSKFHVLFLLFV 219
>AL137013-4|CAI40090.1| 337|Homo sapiens novel protein protein.
Length = 337
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 266 VFFYFVVLKP*LFRGKIPX*RSLFH-LFLIFV 174
VF YF+ +RG++P RS FH LFL+FV
Sbjct: 192 VFSYFIKY----WRGELPSVRSKFHVLFLLFV 219
>AK056374-1|BAB71168.1| 337|Homo sapiens protein ( Homo sapiens
cDNA FLJ31812 fis, clone NT2RI2009406, moderately
similar to Homo sapiens rec mRNA. ).
Length = 337
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 266 VFFYFVVLKP*LFRGKIPX*RSLFH-LFLIFV 174
VF YF+ +RG++P RS FH LFL+FV
Sbjct: 192 VFSYFIKY----WRGELPSVRSKFHVLFLLFV 219
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,279,428
Number of Sequences: 237096
Number of extensions: 638664
Number of successful extensions: 1169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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