Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D04
(318 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 35 0.015
Z83115-2|CAE17889.1| 373|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z81111-2|CAB03266.1| 535|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 27 3.9
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec... 27 3.9
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 26 6.8
Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical pr... 25 8.9
AF038623-7|AAB94157.1| 338|Caenorhabditis elegans Seven tm rece... 25 8.9
AF022982-4|AAB69938.1| 296|Caenorhabditis elegans Dnaj domain (... 25 8.9
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 34.7 bits (76), Expect = 0.015
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +3
Query: 249 DKIKENTEKIKVNKTLP 299
++IKENTE+IKVNKTLP
Sbjct: 64 ERIKENTERIKVNKTLP 80
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 101 EEALSEEVLRMPTDEIISRTRLL*QRKLRISEKANVXEEFSHETIKASKRQNKRK 265
E+A+ EE+L+M T+++ SRT LL ++RI S T+K ++N +
Sbjct: 19 EDAIDEEILKMSTEDLKSRTHLL-DNEIRIMRSEVQRINHSATTLKERIKENTER 72
>Z83115-2|CAE17889.1| 373|Caenorhabditis elegans Hypothetical
protein K11D2.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 80 KSIWEDGEEALSEEVLRMPTDEIISRTRLL*QRKLRISEKANVXEEFSHETIKASKRQ-N 256
+SI + EE + +V R+ +E I + LR+ E N +E E IK SKR+
Sbjct: 299 QSILDSKEEDFAVKVARVTMEEWIVF------KALRVKETINEKKERKFERIKPSKRKAY 352
Query: 257 KRKHGE 274
+R+H E
Sbjct: 353 ERRHKE 358
>Z81111-2|CAB03266.1| 535|Caenorhabditis elegans Hypothetical
protein T01G5.2 protein.
Length = 535
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 2 HEVFYRFSIQN*IENTQITMATTLEDKSIWEDGEEALSEEVLRMPTDEII 151
H V Y + N + + +D I E GE+ LS++ P DEI+
Sbjct: 48 HNVTYLMPVVNIAKRDECKGVKITKDVVIVEAGEKMLSQKQADTPNDEIL 97
>Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical
protein F25H5.7 protein.
Length = 490
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 93 RMEKKRLARKSFVCLLMKSSAVQDSCDNEN*E*VKKRTSXRNFPTKQSRLQNDKIKENTE 272
+ E K +KS C V+D N N E K +S P ++ + ND++K+ +
Sbjct: 32 KKETKTETKKSHDCPPQTIEPVKDE-KNSNSEEKKTTSSNNEVPPQKKLIGNDEVKKEKK 90
Query: 273 K 275
K
Sbjct: 91 K 91
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
protein C29E6.2 protein.
Length = 1193
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 267 CFLLFCRFEALIVSWENSSMTFAFSLIL 184
CF LF R A +V+WEN F +S L
Sbjct: 869 CFQLFQRKFAYLVNWENWIDCFIYSTAL 896
>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
receptor potential subfamilyA-1 protein.
Length = 1206
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 267 CFLLFCRFEALIVSWENSSMTFAFSLIL 184
CF LF R A +V+WEN F +S L
Sbjct: 882 CFQLFQRKFAYLVNWENWIDCFIYSTAL 909
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 155 RTRLL*QRKLRISEKANVXEEFSHETIKASKRQNKRKHGEN 277
+ RL +++ A E + T + K Q KRK GEN
Sbjct: 94 KERLAKRKQKEAESSAKKSENATETTTEKPKEQKKRKGGEN 134
>Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical
protein T27F6.8 protein.
Length = 301
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 166 ESCTADDFISRHTKDFLAKR 107
E+C +DD RH+K ++A R
Sbjct: 104 EACASDDAFERHSKAYVAIR 123
>AF038623-7|AAB94157.1| 338|Caenorhabditis elegans Seven tm
receptor protein 161 protein.
Length = 338
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 276 FSPC-FLLFCRFEALIVSWENSSMTFAFSLIL 184
F+P FLL C + + W N +T +S+ L
Sbjct: 264 FAPTGFLLTCPLFGIDIKWSNEPITIIYSIYL 295
>AF022982-4|AAB69938.1| 296|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 22 protein.
Length = 296
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 195 KKRTSXRNFPTKQSRLQNDKIKENTEKIKVNKTL 296
KK+T RNF + ++ KE E++K TL
Sbjct: 131 KKKTDQRNFKEEIEAIRRQLEKEVNEEVKQKATL 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,455,207
Number of Sequences: 27780
Number of extensions: 113344
Number of successful extensions: 316
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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