Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D02
         (282 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   0.82 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   2.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   2.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   2.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        20   4.4  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 0.82
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 60  TPAG-PTPASRCRPPTL 107
           TP G PTP++   PPT+
Sbjct: 220 TPTGIPTPSTSASPPTV 236


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 115 DPGRSALHAGSGESLWLCYVNSQ 183
           DPGR   H G G      Y+N+Q
Sbjct: 3   DPGRMMGHTGGGLMPPQPYMNAQ 25


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 115 DPGRSALHAGSGESLWLCY 171
           DP  S+ H G   S W  Y
Sbjct: 132 DPSVSSCHQGFSSSTWCNY 150


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +3

Query: 21  PPVS*ACNLAPLNTPAGPTPASRCRPPTL 107
           PP    CN  P      P P     PPT+
Sbjct: 165 PPTGFLCNNYPPLPQVPPLPLPPIFPPTM 193


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 21  PPVS*ACNLAPLNTPAGPTPAS 86
           PP++   N    N+ A PTP S
Sbjct: 296 PPLAQGVNDDAFNSVATPTPTS 317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,909
Number of Sequences: 336
Number of extensions: 828
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4790565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)