Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D02
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.072
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   2.1  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    24   3.6  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   3.6  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.072
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 36  ACNLAPLNTPAGPTPASRCRPPT 104
           + + AP + PA PTP S  RPPT
Sbjct: 119 SASAAPPSAPAPPTPQSELRPPT 141


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 224 SLGARPAYTLSSLTCELT*HSHSDSPDPACSALRPGS 114
           SL +     LS  T  L   S S+SPDP  SA +P S
Sbjct: 193 SLDSADLTPLSVSTSHLNHPSTSNSPDPLYSASQPPS 229


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 170 MLIRRLTRKECTP 208
           +L RRL RKECTP
Sbjct: 18  VLKRRLFRKECTP 30


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 46  RLQAYETGGCGHCLV 2
           R++A ETGGC H  +
Sbjct: 142 RIRAIETGGCPHAAI 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 905,377
Number of Sequences: 5004
Number of extensions: 11450
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)