Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D02
(282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0868 - 20420298-20420915 29 0.42
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 27 2.2
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 26 3.9
10_01_0274 - 2901033-2901778,2902475-2902634 26 5.2
05_05_0173 + 22956927-22958615 26 5.2
02_04_0107 - 19804730-19805044 26 5.2
10_01_0206 - 2206359-2209142 25 6.8
04_04_1038 - 30319139-30319357,30319544-30319714,30319803-303198... 25 6.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 25 9.0
06_03_0219 - 18227559-18227858,18227864-18228340 25 9.0
05_07_0132 + 27903236-27903376,27903498-27903659,27903755-279039... 25 9.0
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 25 9.0
03_02_0738 - 10824121-10825572 25 9.0
>04_03_0868 - 20420298-20420915
Length = 205
Score = 29.5 bits (63), Expect = 0.42
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 15 PQPPVS*ACNLAPLNTPAGPTPASRCRPP 101
P PP C AP GP PA++ RPP
Sbjct: 4 PPPPPPLHCYKAPEEQRLGPRPATQSRPP 32
>02_05_0752 + 31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 121 GRSALHAGSGESLWLCYVNSQVNEERVYAGRAPRDAKRTRYHAA 252
GR++L GSG+ W + ++V + +A + RTR H++
Sbjct: 1096 GRASLQ-GSGDGKWTAFAKTRVEDTIAHALMSKVSGVRTRDHSS 1138
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 42 NLAPLNTPAGPTPASRCRPP 101
N P TP GP P SR PP
Sbjct: 101 NFYPRCTPRGPAPQSRDTPP 120
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Frame = +3
Query: 9 QCPQPPV-S*ACNLA----PLNTPAGPTPASRCRPPT 104
+CP PP + C P +TPA TPA C P T
Sbjct: 218 ECPPPPTPAPECGQPAPEYPPSTPAYGTPAPECPPST 254
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 51 PLNTPAGPTPASRCRPPT 104
P +TP TPA+ C PPT
Sbjct: 251 PPSTPEYGTPATACPPPT 268
>05_05_0173 + 22956927-22958615
Length = 562
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 51 PLNTPAGPTPASRCRPPT 104
PL+ P P PA RPPT
Sbjct: 63 PLHPPYSPPPAELVRPPT 80
>02_04_0107 - 19804730-19805044
Length = 104
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 93 CTSKPASDRRAYSRAPDYRPTRPVAVGTASC 1
C +P RRA ++ P P RP A T C
Sbjct: 6 CRRRPFGIRRAGAQPPLAPPLRPTAEATVIC 36
>10_01_0206 - 2206359-2209142
Length = 927
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 6 RQCPQPPVS*ACNLAPLN 59
+Q P PP+S CNL LN
Sbjct: 798 KQDPLPPISRLCNLTQLN 815
>04_04_1038 -
30319139-30319357,30319544-30319714,30319803-30319850,
30319978-30320166
Length = 208
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 36 ACNLAPLNTPAGPTPASRCRPP 101
A L PL PA P P CR P
Sbjct: 10 AVTLYPLGNPAPPPPRRWCRSP 31
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 6 RQCPQPPVS*ACNLAPLNTPAGPTPASRCRPPT 104
R P PP N P P P P S R PT
Sbjct: 648 RLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPT 680
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 9 QCPQPPVS*ACNLAPLNTPAGPTPASRCRPP 101
+C PP AC + + PA P+P PP
Sbjct: 73 RCRPPPA--ACAASTVRRPAAPSPPPASPPP 101
>05_07_0132 +
27903236-27903376,27903498-27903659,27903755-27903903,
27903999-27904325,27905123-27905323,27906095-27906155,
27906517-27906718,27906899-27907020,27907143-27907247,
27907369-27907452
Length = 517
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 64 GVFKGARLQAYETGGCGHCLV 2
G R++A ETGGC H +
Sbjct: 365 GALPEERIRAVETGGCPHAAI 385
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +3
Query: 21 PPVS*ACNLAPLNTPAGPTPASRCRPPT 104
PP C L P P P C PP+
Sbjct: 87 PPKEQVCKLVPFPVPYPAPPPPSCCPPS 114
>03_02_0738 - 10824121-10825572
Length = 483
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 15 PQPPVS*ACNLAPLNTPAGPTPASRCRPPTL 107
P PP + + PL+ P P P S PP L
Sbjct: 78 PPPPSPPSSSPPPLSFPPPPPPPSSPPPPAL 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,060,967
Number of Sequences: 37544
Number of extensions: 111844
Number of successful extensions: 411
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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