Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D01
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 73 3e-14
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 73 3e-14
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 73 3e-14
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 73 3e-14
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 73 3e-14
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 73 3e-14
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 73 3e-14
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 73 3e-14
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 73 3e-14
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 73 3e-14
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 73 3e-14
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 0.92
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 1.6
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 25 4.9
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom... 25 4.9
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 6.5
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISN 186
R+ W IRK + + + C CQ +K H P+ P + + +D I LP S+
Sbjct: 940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS 999
Query: 187 GFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYL 363
G+ VDRF++ ++ + I AE A+ F + I+ FG P++I D F S
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 364 FKELSKLTGSRHISTTAYHPAANGLVERIHRQLKAAIMC 480
+K+ + + Y P +G ER ++ ++ + C
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 0.92
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +1
Query: 217 RFTRWPEVIALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYLFKELSKLTGSR 396
R RW V ++ E V F+R+++ R I T +E + FK+LS L
Sbjct: 250 RQNRWGVVNVDDENHCEFV---FLRNFLMRTHLQDLIETTSYYHYEKFRFKQLSSLKEQS 306
Query: 397 HISTTAYHPA 426
++T PA
Sbjct: 307 SLATRMGSPA 316
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 302 DIQSLMKAFATVSALISSKAMTSGQRVNRSTAVKQYLKPFEIGS 171
DI L + +T + L+ S+ + ST K YLKP E GS
Sbjct: 761 DILKLPQPISTWNKLLDSECHRNPNMEFLSTFSKNYLKPQEFGS 804
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 81 KSYTPHEVASACIYTTN-EQIFSCTCRYYWT 170
K + PH SA I + IF+C R+YW+
Sbjct: 104 KKFGPHYYLSAMIIGWSLVTIFTCFVRHYWS 134
>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 68 TVSVQKLHATRSRQCMHLHHQRADFLMYMSILLDHYRFRM 187
T SV+ ATR R+C L+ Q AD L+ ++++
Sbjct: 37 THSVKNALATRKRECRALYVQNADIHSEFEEFLNKLQYKI 76
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.0 bits (52), Expect = 6.5
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -3
Query: 347 CLPLSVVIFCGQPKRDIQSLMKAFATVSALISSKAMTSGQRVNRSTAVKQYLKPFEIGSG 168
C S + C QP D+ SL A+ S T+G++++ +PF I S
Sbjct: 388 CSAASFWVECEQPHADLYSLNGVVKAPGAVQSPSESTNGRKIHE--------EPFSI-SN 438
Query: 167 PIISTCT*EN 138
++ CT N
Sbjct: 439 VLLCGCTLRN 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,976
Number of Sequences: 5004
Number of extensions: 40612
Number of successful extensions: 143
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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