Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D01
(505 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 83 8e-17
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 83 8e-17
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 83 8e-17
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 33 0.12
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 33 0.12
Z77663-4|CAB01213.1| 605|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 28 3.3
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 28 3.3
AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical ... 28 4.4
AF039048-7|AAB94234.2| 688|Caenorhabditis elegans Hypothetical ... 27 7.7
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 83.4 bits (197), Expect = 8e-17
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPIS 183
++ WP +R RTC C + H+K + TP F V D++
Sbjct: 1579 KFYWPQMRVCVENCVRTCAKCLCAN--DHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSV 1635
Query: 184 NGFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDW-ISRFGCPQKITTDRGRQFESY 360
G +Y LT +D FT++ + + D KAETV KAF+ W I P K+ TD+G++F +
Sbjct: 1636 QGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNG 1695
Query: 361 LFKELSKLTGSRHISTTAYHPAANGLVERIHRQL 462
LF + + + HI+T Y+ ANG VER ++ +
Sbjct: 1696 LFAQFTHMLKIEHITTKGYNSRANGAVERFNKTI 1729
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 83.4 bits (197), Expect = 8e-17
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPIS 183
++ WP +R RTC C + H+K + TP F V D++
Sbjct: 1482 KFYWPQMRVCVENCVRTCAKCLCAN--DHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSV 1538
Query: 184 NGFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDW-ISRFGCPQKITTDRGRQFESY 360
G +Y LT +D FT++ + + D KAETV KAF+ W I P K+ TD+G++F +
Sbjct: 1539 QGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNG 1598
Query: 361 LFKELSKLTGSRHISTTAYHPAANGLVERIHRQL 462
LF + + + HI+T Y+ ANG VER ++ +
Sbjct: 1599 LFAQFTHMLKIEHITTKGYNSRANGAVERFNKTI 1632
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 83.4 bits (197), Expect = 8e-17
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Frame = +1
Query: 10 RYVWPNIRKDCRLWTRTCVDCQRSKVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPIS 183
++ WP +R RTC C + H+K + TP F V D++
Sbjct: 1493 KFYWPQMRVCVENCVRTCAKCLCAN--DHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSV 1549
Query: 184 NGFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDW-ISRFGCPQKITTDRGRQFESY 360
G +Y LT +D FT++ + + D KAETV KAF+ W I P K+ TD+G++F +
Sbjct: 1550 QGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNG 1609
Query: 361 LFKELSKLTGSRHISTTAYHPAANGLVERIHRQL 462
LF + + + HI+T Y+ ANG VER ++ +
Sbjct: 1610 LFAQFTHMLKIEHITTKGYNSRANGAVERFNKTI 1643
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 33.1 bits (72), Expect = 0.12
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Frame = +1
Query: 55 RTCVDCQRSKVTR----HTKSPVHAFTPPTSRFSHVHVDIIGPLPISN---GFK-YCLTA 210
R+CV CQ+ H K T P++ F HV +D +GP+ N FK Y L
Sbjct: 1768 RSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPIAYKNKDTHFKAYVLIY 1827
Query: 211 VDRFTRWPEVIALEDIKAETVAKAFIRDW---ISRFGCPQKITTDRGRQF 351
TR LE I T A+ FI +R G P+ I +D + F
Sbjct: 1828 TCLVTR---AAKLELIPDGTTAR-FIESLGIIFNRVGVPETIYSDNAQTF 1873
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 33.1 bits (72), Expect = 0.12
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Frame = +1
Query: 55 RTCVDCQRSKVTR----HTKSPVHAFTPPTSRFSHVHVDIIGPLPISN---GFK-YCLTA 210
R+CV CQ+ H K T P++ F HV +D +GP+ N FK Y L
Sbjct: 1768 RSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPIAYKNKDTHFKAYVLIY 1827
Query: 211 VDRFTRWPEVIALEDIKAETVAKAFIRDW---ISRFGCPQKITTDRGRQF 351
TR LE I T A+ FI +R G P+ I +D + F
Sbjct: 1828 TCLVTR---AAKLELIPDGTTAR-FIESLGIIFNRVGVPETIYSDNAQTF 1873
>Z77663-4|CAB01213.1| 605|Caenorhabditis elegans Hypothetical
protein F53F4.4 protein.
Length = 605
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 274 AKAFIRDWISRFGCPQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERIH 453
A A + I R+GCP KI R +F S + + S L S ++ T +G ++
Sbjct: 112 AYALVMKAIERYGCPSKIEVARVNEFLS-VGVDASTLLISENLENTTAKVTTDGSKPEVN 170
Query: 454 RQLKAAI 474
+K ++
Sbjct: 171 MLVKTSL 177
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 78 FKSYTPHEVASACIYTTNEQIFSCTCRYYWTTTDFEWFQVLLDSSRPVHTLA 233
F Y P +A ACI+ + + +T F WF+ S R V +A
Sbjct: 273 FMRYKPETIACACIFLAARTVENPIA---LPSTPFHWFEAFDTSDRDVEAIA 321
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 78 FKSYTPHEVASACIYTTNEQIFSCTCRYYWTTTDFEWFQVLLDSSRPVHTLA 233
F Y P +A ACI+ + + +T F WF+ S R V +A
Sbjct: 273 FMRYKPETIACACIFLAARTVENPIA---LPSTPFHWFEAFDTSDRDVEAIA 321
>AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical
protein T25D3.2 protein.
Length = 310
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 100 KSPVHAFTPPTSRFSH 147
K+PVH + PPTSRF+H
Sbjct: 61 KTPVH-YRPPTSRFAH 75
>AF039048-7|AAB94234.2| 688|Caenorhabditis elegans Hypothetical
protein F16B4.3 protein.
Length = 688
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 207 CQAILETIRNR*WSNNIDMYMRKSARWWCKCMHWRLR 97
C+ IL T+RN S N+D ++ R+ K ++ R
Sbjct: 157 CERILSTMRNFAGSENLDSFLTSFVRYVAKSPNFSFR 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,091
Number of Sequences: 27780
Number of extensions: 231159
Number of successful extensions: 614
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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