Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C23
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    26   3.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   3.2  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.2  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    25   5.5  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    25   7.3  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.3  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.3  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   7.3  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   9.6  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   9.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.6  

>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 281 TRGSETNEVMAFKYH-YLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKDGV 457
           T   +T E+ A+    Y S I+R    I  ++  + K +KK+D   + SK LL    D  
Sbjct: 258 TDNLDTPELRAYCVDKYASQIMRAFIRIDFER--SKKTKKKHDP-RLVSKLLLSNEYDLK 314

Query: 458 VLDLMDTFLKD 490
            L  M+T LKD
Sbjct: 315 ELPFMETLLKD 325


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +2

Query: 299  NEVMAFKYHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKDGVVLD---L 469
            +++M + + + S  + ++++   K  P   D K Y+  ++   KL+      ++     L
Sbjct: 1540 SDIMGWNF-FKSPEIADLNHYIPKTDPRLCDTKTYEESKLIIWKLICQKACSLLFKYDIL 1598

Query: 470  MDTFLKDCIREF 505
            +D+F++DCIR F
Sbjct: 1599 LDSFIEDCIRMF 1610



 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 457  CLGSDGHISKRLYQG 501
            CLGS+GH  K+L +G
Sbjct: 2467 CLGSNGHTYKQLVKG 2481


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 501 SLIQSFRNVSIRSKTTPSLPGFSSFLENIST 409
           SLI+SF N+++ S  T  L  +S+   ++ST
Sbjct: 359 SLIESFNNITMESVLTECLNDWSTTWSSVST 389


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 448 RWRCLGSDGH 477
           RWRCLGS+G+
Sbjct: 13  RWRCLGSEGN 22


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/39 (23%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 320 YHYLSYILREIHNIKNKQKPADKDEKK-YDVVEIFSKKL 433
           YH   Y+LR++H + + +  +  D+ +   ++E++S ++
Sbjct: 166 YHKFKYLLRQMHELLSDENNSVADQNRGTHLLELYSLEI 204


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 459 TTPSLPGFSSFLENISTTSYFFSSLSAGFCLF 364
           +T  +P F  + +N+  TS+ FSSL    C +
Sbjct: 2   STVLIPTFVPYGKNLLNTSFSFSSLLCILCFY 33


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 398 KYDVVEIFSKKLLKPGKDGVVLDLMDTFLKDCIREFPYR 514
           KYD+V      ++ P    + L  +D F+++   EF Y+
Sbjct: 415 KYDIVGTPQGSIVSPILANIYLHQLDEFIENLKSEFDYK 453


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 459 TTPSLPGFSSFLENISTTSYFFSSLSAGF 373
           +T S+P  SS + +  +TS F S  S+GF
Sbjct: 146 STTSIPSISSTISSSVSTSSFTSLSSSGF 174


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 383 DKDEKKYDVVEIFSKKLLKPGKDGVV 460
           +KD    D VE+F +K++ P   G V
Sbjct: 300 EKDPAHQDEVEVFGRKIIVPKASGNV 325


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
 Frame = -2

Query: 504 NSLIQSFRNVS-IRSKTTPSLPGFSSFLENISTTSYFFSSLSAGFCLFFILCISLRM*DK 328
           N  ++S  N+S I       LP   S   + S+  ++ SS  A   + F    S +  D+
Sbjct: 647 NEAVKSLINLSDIPLSIAEILPADESLRYSSSSVPFYESSTCAPIDVVFQFESSSKWPDE 706

Query: 327 *WYLNA--MTSLVSLPRVISFLDNISKTLLTLSALCRSPDNCCRLR 196
              +    +  L+ +  ++  LDN+ +  + L        NCC L+
Sbjct: 707 LEGIQRTKIAFLLKIAELLEALDNVERASVGLENTDNPTHNCCFLQ 752


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/67 (20%), Positives = 33/67 (49%)
 Frame = +2

Query: 239 KVSKVLEMLSKKEMTRGSETNEVMAFKYHYLSYILREIHNIKNKQKPADKDEKKYDVVEI 418
           ++ K+LE        +     E  A     ++++ +E+ +++++ K A++  + YD +EI
Sbjct: 321 ELEKLLEAAQSSFEEQLESHKEAEASLKSQINFLEKEVSSLESQLKLANERLRHYDEIEI 380

Query: 419 FSKKLLK 439
                LK
Sbjct: 381 SDMSELK 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,365
Number of Sequences: 5004
Number of extensions: 43310
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)