Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C23
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958...    28   4.2  
06_03_0558 - 22139878-22139895,22141073-22142404,22143355-221438...    27   7.4  
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    27   9.8  
04_01_0013 - 217743-217839,218021-218131,218226-218428,218540-21...    27   9.8  
03_04_0174 - 18044516-18046327                                         27   9.8  

>03_04_0037 +
           16694760-16695227,16695563-16695642,16695735-16695828,
           16695973-16696071,16696650-16696742,16696822-16696941,
           16697422-16697525,16697734-16697806,16698023-16698085
          Length = 397

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 323 HYLSYILREIHNIKNKQKPADKDEKKYDVVEIFS 424
           +Y+S +LR+  + + K  PAD D  K D+ E+F+
Sbjct: 131 NYISRVLRKSSSDRGKAPPAD-DTAKQDLCEVFT 163


>06_03_0558 -
           22139878-22139895,22141073-22142404,22143355-22143804,
           22144247-22144315
          Length = 622

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 62  YIPREEIAYYSTIQGQQKEPYLP-PVLLDSLHKFVL 166
           ++ R E+A +S   G+Q++  LP PV++  + +F L
Sbjct: 391 FVERPEVAVFSVDGGRQRQTLLPSPVVMQHMVRFEL 426


>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 106 SAKRTLPSTCLIRFTAQVCIGC 171
           +AKRTL  TC I F AQ  + C
Sbjct: 3   TAKRTLRVTCSINFLAQTSLMC 24


>04_01_0013 -
           217743-217839,218021-218131,218226-218428,218540-218654,
           219038-219204,219505-219565,219872-219990,220206-220286
          Length = 317

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 447 LPGFSSFLENISTTSYFFSSLSAGFCLFFILCISLRM 337
           L G    L N+     FF  + A +  FF+LC S  M
Sbjct: 158 LVGLKQLLPNLELPMCFFWKIKAKWMPFFVLCFSTIM 194


>03_04_0174 - 18044516-18046327
          Length = 603

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 473 PSDPRQRHL-YPASAAF*KISQQHHTSSHLY 384
           PS P Q H  YP+S         HHT +H Y
Sbjct: 22  PSPPDQPHKSYPSSRGSTSSPSSHHTHNHTY 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,234
Number of Sequences: 37544
Number of extensions: 250782
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)