Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C23
         (547 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035353-1|AAH35353.1|  441|Homo sapiens ankyrin repeat and MYND...   104   2e-22
BX538083-1|CAD98007.1|  255|Homo sapiens hypothetical protein pr...    29   8.0  
BC032815-1|AAH32815.1|  295|Homo sapiens keratin 222 pseudogene ...    29   8.0  

>BC035353-1|AAH35353.1|  441|Homo sapiens ankyrin repeat and MYND
           domain containing 2 protein.
          Length = 441

 Score =  104 bits (249), Expect = 2e-22
 Identities = 66/179 (36%), Positives = 93/179 (51%), Gaps = 3/179 (1%)
 Frame = +2

Query: 8   AQMAAFVGNHHTVATINNYIPREEIAYYSTIQGQQKEPYLPPVLLDSLHKFVLGVNIHPV 187
           AQMAAFVG H  V  INN+ PRE + YY+  QG  KEP LPP L   LHK +   N+HPV
Sbjct: 117 AQMAAFVGQHDCVTIINNFFPRERLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPV 176

Query: 188 RXXXXXXXXXXXXHNA--DKVSKVLEMLSKKEMTRGSETNEVMAFKYHYLSYILREIHNI 361
           +              A  +K  +V++++ +K M +  + NEV+A K HY+S I ++  N 
Sbjct: 177 KIVMLVNENPLLTEEAALNKCYRVMDLICEKCM-KQRDMNEVLAMKMHYISCIFQKCINF 235

Query: 362 KNKQKPADKDEKKYDVVEIFSKKLLK-PGKDGVVLDLMDTFLKDCIREFPYRQCTTLHQ 535
                     E K D +    K LLK    DG  +   +  +++ IR+FPY + T L Q
Sbjct: 236 ------LKDGENKLDTL---IKSLLKGRASDGFPV-YQEKIIRESIRKFPYCEATLLQQ 284


>BX538083-1|CAD98007.1|  255|Homo sapiens hypothetical protein
           protein.
          Length = 255

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 2   HEAQMAAFVGNHHTVATINNYIPREEIAYYSTIQGQQKE 118
           HE  +   +     +AT  + + +EEI YY  IQG +K+
Sbjct: 82  HEMLLNTKMRLEQEIATYRHLLEKEEIRYYGCIQGGKKD 120


>BC032815-1|AAH32815.1|  295|Homo sapiens keratin 222 pseudogene
           protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 2   HEAQMAAFVGNHHTVATINNYIPREEIAYYSTIQGQQKE 118
           HE  +   +     +AT  + + +EEI YY  IQG +K+
Sbjct: 122 HEMLLNTKMRLEQEIATYRHLLEKEEIRYYGCIQGGKKD 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,030,457
Number of Sequences: 237096
Number of extensions: 1495902
Number of successful extensions: 6969
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6968
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)