Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C23
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 59 2e-09
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 29 2.9
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 29 2.9
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 28 5.0
AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical... 28 5.0
AL110471-3|CAB63308.1| 818|Caenorhabditis elegans Hypothetical ... 27 8.8
AL034364-6|CAA22254.2| 818|Caenorhabditis elegans Hypothetical ... 27 8.8
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 59.3 bits (137), Expect = 2e-09
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 5/182 (2%)
Frame = +2
Query: 8 AQMAAFVGNHHTVATINNYIPRE--EIAYYSTIQGQQK--EPYLPPVLLDSLHKFVLGVN 175
+++AAFVG+H VA INN+I + E + G+ + E Y P L +H
Sbjct: 112 SELAAFVGHHECVAIINNHITIDVIEDLLRPKVNGKYEGAEEY-PDELAVFIHSLCGSHE 170
Query: 176 IHPVRXXXXXXXXXXXXHNADKVSKVLEMLSKKEMTRGSETNEVMAFKYHYLSYILREIH 355
IHPV+ K+ V++ + +K++ R E+NE+M+ K + + +RE
Sbjct: 171 IHPVKIIFRFSKYPDSLKYKKKILYVIDRVFEKQL-RCKESNEIMSLKLWLILFSMRETS 229
Query: 356 NIKNKQKPADKDEKKYDVVEIFSKKLLKPGKDG-VVLDLMDTFLKDCIREFPYRQCTTLH 532
K EK + + KL+ ++G +D L++ + FPY+ + LH
Sbjct: 230 KFVESNK-----EKSPEEASLQYAKLISTWQEGDETRRALDVMLRNAVASFPYKH-SLLH 283
Query: 533 QT 538
T
Sbjct: 284 DT 285
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 290 SETNEVMAFKYHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKDGVVLD 466
S+T VM Y + + + K+KP +++ + E F K L PG D VV D
Sbjct: 580 SKTPSVMIIGYDLFRILT--VEDDPKKKKPKNRNRRLEKAKEDFRKYLQNPGPDMVVCD 636
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 290 SETNEVMAFKYHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKDGVVLD 466
S+T VM Y + + + K+KP +++ + E F K L PG D VV D
Sbjct: 580 SKTPSVMIIGYDLFRILT--VEDDPKKKKPKNRNRRLEKAKEDFRKYLQNPGPDMVVCD 636
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 48 PPSTIIYRERKLLTIQLSR-VSKKNLTFHLSY 140
P S++ + KLLT+QL + KKN FH SY
Sbjct: 530 PISSVSGKSIKLLTLQLKETMHKKNSFFHSSY 561
>Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical
protein K05D4.3 protein.
Length = 321
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 531 CKVVHCL*GNSLIQSFRNVSIRSKTTPSLPGFSSFLENISTTSYFFSSLSAGFCLFFILC 352
C +V C I FR+ R ++TP P F + T Y L GF + I+C
Sbjct: 34 CSIVFCFIFPFYIVVFRSNRQRDRSTPIFPIIKHFYSTVVRT-YI---LHFGFYVIVIIC 89
Query: 351 ISL 343
+L
Sbjct: 90 FAL 92
>Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical
protein F49B2.6 protein.
Length = 1082
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3
Query: 404 HTSSHLYQQVSVYFLYYVFL*GCKISSGI*TP*LHWFHYPESSPSWITSLKLYL 243
HTSSH +V V + + + G +S G LH +P+ SPS I SL +L
Sbjct: 29 HTSSHRRTRVCVAITFGLLMFGLGVSVG---AFLHAVMFPDGSPS-ILSLPSFL 78
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 48 PPSTIIYRERKLLTIQLSR-VSKKNLTFHLSY 140
P S++ + KLLT+QL + KKN FH SY
Sbjct: 530 PISSVSGKSIKLLTLQLKETMHKKNSFFHSSY 561
>AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical
protein F49B2.6 protein.
Length = 1082
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3
Query: 404 HTSSHLYQQVSVYFLYYVFL*GCKISSGI*TP*LHWFHYPESSPSWITSLKLYL 243
HTSSH +V V + + + G +S G LH +P+ SPS I SL +L
Sbjct: 29 HTSSHRRTRVCVAITFGLLMFGLGVSVG---AFLHAVMFPDGSPS-ILSLPSFL 78
>AL110471-3|CAB63308.1| 818|Caenorhabditis elegans Hypothetical
protein W06D4.6 protein.
Length = 818
Score = 27.1 bits (57), Expect = 8.8
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 260 MLSKKEMTRGSETNEVMAFK-YHYLSYIL-REIHNIKNKQKPADKDEKKYDVVEIFSKKL 433
MLS + + G + F YH + IL H ++ Q DKD K + V + K+
Sbjct: 142 MLSGRSLGLGGNRRKCALFDPYHEGALILYAPEHLSEHAQLKEDKDRKVHVVADPVVGKI 201
Query: 434 LKP-GKDGVVLDLMDTFLKDCI 496
L+P +DGV F+ DC+
Sbjct: 202 LRPHQRDGV------KFMWDCV 217
>AL034364-6|CAA22254.2| 818|Caenorhabditis elegans Hypothetical
protein W06D4.6 protein.
Length = 818
Score = 27.1 bits (57), Expect = 8.8
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 260 MLSKKEMTRGSETNEVMAFK-YHYLSYIL-REIHNIKNKQKPADKDEKKYDVVEIFSKKL 433
MLS + + G + F YH + IL H ++ Q DKD K + V + K+
Sbjct: 142 MLSGRSLGLGGNRRKCALFDPYHEGALILYAPEHLSEHAQLKEDKDRKVHVVADPVVGKI 201
Query: 434 LKP-GKDGVVLDLMDTFLKDCI 496
L+P +DGV F+ DC+
Sbjct: 202 LRPHQRDGV------KFMWDCV 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,291,072
Number of Sequences: 27780
Number of extensions: 240986
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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