Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C23
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.22 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   0.88 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.88 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   0.88 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   4.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 465 SKTTPSLPGFSSFLENISTTSYFFSSLS 382
           + T+PS PG  S   + S+ S FFSS+S
Sbjct: 77  TSTSPSYPGGGSSSPSPSSPSSFFSSVS 104


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 320 YHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFS 424
           Y     I+   H+ K  QKP +KDE  Y  ++I S
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKDEIIYPNLKIES 453


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 320 YHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFS 424
           Y     I+   H+ K  QKP +KDE  Y  ++I S
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKDEIIYPNLKIES 453


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 302 HWFHYPESSPS--WITSLKLYLLY 237
           HW  YPE +PS  ++ +L LY+L+
Sbjct: 36  HWLVYPEPNPSLHYLLAL-LYILF 58


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -3

Query: 302 HWFHYPESSPSW 267
           +W+ YP  +P W
Sbjct: 40  NWYQYPPLNPMW 51


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -3

Query: 302 HWFHYPESSPSW 267
           +W+ YP  +P W
Sbjct: 6   NWYQYPPLNPMW 17


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 227 HNADKVSKVLEMLSKKEM 280
           HN+DK+S   E L+ KE+
Sbjct: 231 HNSDKMSDQQENLTLKEV 248


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 77   EIAYYSTIQGQQKEPYLPPVLLDS 148
            ++  Y  ++G+QK+P +     DS
Sbjct: 1118 KVDMYMNLEGEQKDPVIFSTSFDS 1141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,937
Number of Sequences: 438
Number of extensions: 2926
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)