Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C22
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    28   0.82 
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   3.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   5.8  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 129 AKAQK-VQRRKMAAPPNLR*GVWKRGAAGVCRRLSTR 236
           A AQK +Q +++   P+L   VWKRG   V  RL  R
Sbjct: 43  AFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLR 79


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 242 VAACRETSTHARRSTLPHPLSKIWGRR-HLSSLNLLSFRLKKSLSQHYPLSSPQNFLQN 69
           + AC   S +   +  P P+ K WG+   L++L  ++ +L  +    +    P  FL+N
Sbjct: 681 IIACHAESRNWIWNHSPKPIQKFWGKSVELNTLGPVTIKL--ACGTEFSFMKPACFLKN 737


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 191  HPLSKIWGRRHLSSLNLL 138
            HP +K W RR +S+ N L
Sbjct: 1916 HPATKRWERREISNFNYL 1933


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,336
Number of Sequences: 5004
Number of extensions: 22729
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)