Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C22
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1151 - 10822616-10823863 30 1.1
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375... 29 1.9
01_02_0059 - 10701859-10701963,10702034-10702153,10702534-107026... 28 3.3
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 28 4.3
09_04_0355 + 16922863-16924224 27 7.5
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615... 27 7.5
07_03_1071 + 23753883-23754752 27 7.5
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 27 7.5
08_02_0037 + 11480213-11481013,11483612-11483707 27 10.0
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376... 27 10.0
01_01_0644 - 4878742-4878758,4879134-4879231,4879913-4879935,488... 27 10.0
>07_01_1151 - 10822616-10823863
Length = 415
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 221 STHARRSTLPHPLSKIW-GRRHLSSLNLLSFRLKKSLSQ 108
ST+ ++ T HP+ KIW R++SS N F L Q
Sbjct: 376 STNPKKKTSSHPMPKIWKSSRYVSSGNFRCFTSYSQLKQ 414
>01_07_0288 +
42534552-42534558,42535302-42537280,42537367-42537513,
42537982-42538526,42538906-42538981,42539357-42539437
Length = 944
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 266 SSPRSLQAVAACRETSTHARRSTLPHPLSKIWGRRHLSSLNLLSFRLKKSLSQHYPLSSP 87
S +SL +++ E STH+ R + PH R +SS L S K S + S
Sbjct: 782 SQHKSLGSISEHSEVSTHSHRVSSPHDTELSNRRARISSDELFSASGKSDDSNNRDARSL 841
Query: 86 QN 81
QN
Sbjct: 842 QN 843
>01_02_0059 -
10701859-10701963,10702034-10702153,10702534-10702609,
10702897-10703276
Length = 226
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 147 QRRKMAAPPNLR*GVWKRGAAGVCRRLSTR 236
+RRKMAA PN GV RG +CR+ R
Sbjct: 12 RRRKMAAAPNFVVGVGGRGGQ-ICRQAPAR 40
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 203 SGGRVSTSLDTRPPPAATAGSCESATDESWR 295
S GR T PP AG ++++ESWR
Sbjct: 41 SSGRHRTDGTNNPPHEEAAGKVPASSEESWR 71
>09_04_0355 + 16922863-16924224
Length = 453
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 261 PAVAAGGGRVSRDV 220
PAVAAGGGR++R V
Sbjct: 369 PAVAAGGGRMARQV 382
>07_03_1779 -
29458889-29459249,29461107-29461283,29461374-29461573,
29461673-29462752
Length = 605
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 194 EAWSG--GRVSTSLDTRPPPAATAGSCESATDESWRV 298
EAW G G V +++T+P T+G + TD WR+
Sbjct: 488 EAWGGSAGAVKCAMETQPIVNRTSGGLDIGTD--WRL 522
>07_03_1071 + 23753883-23754752
Length = 289
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 138 QKVQRRKMAAPPNLR*GVWKRGAAGVCRRLSTRGH 242
+K +KMA P L KRG++GV +S R H
Sbjct: 249 KKASDKKMAVTPLLGPSHGKRGSSGVHELISPRSH 283
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 188 GVEAWSGGRVSTSLDTRPPPAATAGSCES 274
G++ + +STS +PPPA+ G+C++
Sbjct: 197 GIDPSNPSFLSTSDQAKPPPASFKGTCQT 225
>08_02_0037 + 11480213-11481013,11483612-11483707
Length = 298
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 181 DKGCGSVERRACVDVSRHAATACSDRGE 264
D+GC S E+R C+ A TA + + E
Sbjct: 240 DEGCSSPEKRPCLVAGGGAQTAAAAKAE 267
>03_06_0619 -
35136435-35136728,35137155-35137358,35137476-35137646,
35137902-35138050,35138380-35138527,35138614-35138682,
35138767-35139027,35139223-35139417,35139772-35139888,
35140026-35140961
Length = 847
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 291 QDSSVADSQLPAVAAGGGR 235
QD+ VAD LPA+ GGR
Sbjct: 211 QDAHVADGGLPAIQIAGGR 229
>01_01_0644 -
4878742-4878758,4879134-4879231,4879913-4879935,
4880888-4880971,4882011-4882265,4883026-4883615,
4884154-4884331,4884484-4884675,4884792-4884872
Length = 505
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -1
Query: 251 LQAVAACRETSTHARRSTLPHPLSKIWGRRHLSSLNLLSFRLKK---SLSQHYP 99
L + A R THA +LP R H+SS L+ +L++ S ++H P
Sbjct: 28 LYSQLATRRRLTHACARSLPDAYESGMNRGHISSSELIDAKLEERRISTAKHCP 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,086,047
Number of Sequences: 37544
Number of extensions: 184631
Number of successful extensions: 862
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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