Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C22
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54271-2|CAA91033.1|  309|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    27   6.7  

>Z54271-2|CAA91033.1|  309|Caenorhabditis elegans Hypothetical
           protein F21D5.2 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   HEAELHEAKKPEETLNDAPAAN 67
           H+ EL EAKKPEE+    PA N
Sbjct: 61  HKKELEEAKKPEES-EAVPAEN 81


>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
           abnormal protein1 protein.
          Length = 1732

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 173 WGRRHLSSLNLLSFRLKKSLSQHY 102
           W R  L+S +LLS +LKK+ S+ Y
Sbjct: 377 WVRTELTSPHLLSVQLKKAFSKSY 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,151,480
Number of Sequences: 27780
Number of extensions: 137662
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)