Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C21
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   2.8  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    24   4.9  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    24   4.9  
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    24   6.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    24   6.5  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    23   8.6  

>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 61  NFDGTFFGR*LKLLRVTWYSIGI-GYSTFH 147
           N+D   FG+ L+LL+ T Y++   G S FH
Sbjct: 294 NYDCQTFGQVLELLQSTIYAVDTNGQSIFH 323


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 144 KSTIPYTYTIPRYSE*LQLSTKKSPIKIRIALREIAQNK 28
           + T+ ++ T PR  E L     K P++I +  R +  ++
Sbjct: 600 RQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASE 638


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 174 KKIKTQKIEYNPIQCTVSQVSAWIYEK 254
           + I     E  PI C++ Q+  W+ EK
Sbjct: 777 QNINMSIFEAFPIACSLQQIEHWVNEK 803


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 138 TIPYTYTIPRYSE*LQLSTKKSPIKIRIALREIAQNKQ 25
           T  Y  TIP  S+ +    +K  I+ RIALR IA++++
Sbjct: 90  TCLYAKTIPCISDCVMAELEKLGIRYRIALR-IAKDER 126


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 323 SLHVSFCIRNPNIFLV 276
           S+  S CIRNP +FLV
Sbjct: 908 SVDDSGCIRNPQLFLV 923


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +3

Query: 180 IKTQKIEYNPIQCTVSQVSAWIYEKYFYFVIYY*KNIRVPYTK 308
           + TQ +    I   + +++  ++   +Y+     K IRVP+ K
Sbjct: 156 VYTQIVGRTSISWLIIEINLLVHVTMYYYYYLVAKGIRVPWKK 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,451
Number of Sequences: 5004
Number of extensions: 24068
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)