Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C21
         (325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0858 + 22048362-22049513,22049674-22049740,22050404-220504...    29   0.63 
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    27   4.5  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    26   5.9  
01_05_0650 + 23925913-23926025,23926128-23926388,23927431-239274...    26   7.8  

>07_03_0858 +
           22048362-22049513,22049674-22049740,22050404-22050476,
           22050606-22050642,22050877-22050957
          Length = 469

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 167 NPSYFRK*KVLYPIPILYHVTRSNFSYLPKKVPSK 63
           +PS+ R+ + LYP P+L  + R   ++LP + P +
Sbjct: 54  DPSFLRRYRALYPPPLLGILPRDADAFLPAEPPHR 88


>01_05_0117 -
           18300157-18301106,18301149-18301543,18302592-18302681,
           18303723-18303836,18303903-18304046,18316147-18316312,
           18316396-18317130,18317219-18317422,18317496-18318177,
           18318272-18318528,18318604-18319298,18319345-18319382,
           18319847-18319928,18320018-18320112,18320443-18320526,
           18320601-18320891,18321521-18321853,18321948-18322150,
           18322243-18322399,18322482-18322585,18322675-18322835,
           18323511-18323824,18324317-18324589,18324666-18324967,
           18325459-18325549,18326140-18326190,18326700-18326768,
           18326926-18327017,18327082-18327148,18328582-18328746,
           18329027-18329103,18329572-18329766,18330208-18330275,
           18331081-18331172,18331399-18331522,18331608-18331705,
           18332384-18332997,18333620-18333626
          Length = 2892

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 278 VINNKIKIFLINPSTYL*NCALNRVIFNFLSFNFFTRN 165
           + + + ++   NPS Y+ NC +N  + +F++   F  N
Sbjct: 774 IFSREFRLLRRNPSVYIVNC-VNLTVLSFVAMTVFWHN 810


>01_03_0014 +
           11655216-11655287,11657833-11658048,11659848-11661912,
           11662966-11663013,11663081-11663328,11663429-11663558,
           11663707-11663983,11664102-11664180,11664311-11664397,
           11664586-11664618
          Length = 1084

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 299 RNPNIFLVINNKIKIFLINPSTYL*NCALNR 207
           R+ NIFL  N   K+F  N ST+L  CA+ +
Sbjct: 615 RSANIFLDKNFMPKVFNANLSTFLGLCAVQQ 645


>01_05_0650 +
           23925913-23926025,23926128-23926388,23927431-23927449,
           23927526-23927745,23927871-23928052,23928158-23928447,
           23928621-23928750,23928888-23929235
          Length = 520

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 140 VLYPIPILYHVTRSNFSYLPKKVPSKFV 57
           VL+ +P+ Y VT+   +Y P  V   F+
Sbjct: 470 VLFSLPVSYPVTKDTLNYTPVAVGGLFL 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,381,405
Number of Sequences: 37544
Number of extensions: 120386
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)