Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C21
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog (hedg...    27   4.1  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    26   7.2  
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 9 protein.
          Length = 553

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 82  QKKSHQNSYSPSGDCP 35
           QKKS+  SY P  +CP
Sbjct: 82  QKKSYTQSYKPKAECP 97


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 105  SE*LQLSTKKSPIKIRIALREIAQNKQTRQ 16
            SE L  S +KSPIKI   + E+ +N ++R+
Sbjct: 2866 SEELPESPEKSPIKIPRRISELDENDESRR 2895


>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical
           protein ZK270.2e protein.
          Length = 4541

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 97  TSAIYQKKSHQNSYSPSGD 41
           TS  +Q+  H+ SYSP GD
Sbjct: 438 TSGHHQQSPHELSYSPRGD 456


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical
           protein ZK270.2d protein.
          Length = 4648

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 97  TSAIYQKKSHQNSYSPSGD 41
           TS  +Q+  H+ SYSP GD
Sbjct: 427 TSGHHQQSPHELSYSPRGD 445


>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical
           protein ZK270.2a protein.
          Length = 4530

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 97  TSAIYQKKSHQNSYSPSGD 41
           TS  +Q+  H+ SYSP GD
Sbjct: 427 TSGHHQQSPHELSYSPRGD 445


>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical
           protein ZK270.2e protein.
          Length = 4541

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 97  TSAIYQKKSHQNSYSPSGD 41
           TS  +Q+  H+ SYSP GD
Sbjct: 438 TSGHHQQSPHELSYSPRGD 456


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical
           protein ZK270.2d protein.
          Length = 4648

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 97  TSAIYQKKSHQNSYSPSGD 41
           TS  +Q+  H+ SYSP GD
Sbjct: 427 TSGHHQQSPHELSYSPRGD 445


>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical
           protein ZK270.2a protein.
          Length = 4530

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 97  TSAIYQKKSHQNSYSPSGD 41
           TS  +Q+  H+ SYSP GD
Sbjct: 427 TSGHHQQSPHELSYSPRGD 445


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 150 SKITRVPGKKIKTQKIEYNPIQCTVSQVSAWIY 248
           +K T  P     T K  ++  +CTV   + W+Y
Sbjct: 306 TKTTSTPTTTTTTPKTPFDTSKCTVMCSTGWVY 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,065,321
Number of Sequences: 27780
Number of extensions: 128538
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)