Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C15
         (393 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    96   3e-20
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    96   3e-20
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    96   3e-20
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    96   3e-20
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    96   3e-20
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                96   4e-20
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                89   4e-18
X87832-1|CAB57274.1| 1754|Homo sapiens NOV/plexin-A1 protein pro...    31   1.8  

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 49/111 (44%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 252 TNIGSG----VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFG 392
            N+G+G                                      DDDMGFG
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFG 111


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 49/111 (44%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 252 TNIGSG----VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFG 392
            N+G+G                                      DDDMGFG
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFG 111


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 49/111 (44%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 252 TNIGSG----VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFG 392
            N+G+G                                      DDDMGFG
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFG 111


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 49/111 (44%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 252 TNIGSG----VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFG 392
            N+G+G                                      DDDMGFG
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFG 111


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 49/111 (44%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 252 TNIGSG----VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFG 392
            N+G+G                                      DDDMGFG
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFG 111


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 95.9 bits (228), Expect = 4e-20
 Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS +ELAC+YSAL+L DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 252 TNIGSG----VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFG 392
            N+G+G                                      DDDMGFG
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFG 111


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 89.4 bits (212), Expect = 4e-18
 Identities = 47/111 (42%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS +ELA +YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 252 TNIGSG----VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFG 392
            ++G+G                                      DDDMGFG
Sbjct: 61  CDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFG 111


>X87832-1|CAB57274.1| 1754|Homo sapiens NOV/plexin-A1 protein
           protein.
          Length = 1754

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 255 WLLNHEH*CPPRPLQIDQASTAQHLQQPL 169
           WLLN E  C   PLQID     Q   QPL
Sbjct: 365 WLLNKELGCINSPLQIDDDFRGQDFNQPL 393


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,882,809
Number of Sequences: 237096
Number of extensions: 797927
Number of successful extensions: 1172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)