Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C15
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   111   2e-25
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   107   3e-24
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    28   2.1  
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonin...    26   8.4  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    26   8.4  
AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical ...    26   8.4  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    26   8.4  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  111 bits (266), Expect = 2e-25
 Identities = 55/108 (50%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 252 TNIGSGVXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFG 392
           T++ SG                                   DDDMGFG
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFG 108


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  107 bits (257), Expect = 3e-24
 Identities = 54/108 (50%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 252 TNIGSGVXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFG 392
           T++ SG                                   DDDMGFG
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFG 108


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 96  CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 266
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV +    IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 196 YGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAF 80
           +GST+T  AFS   +F   T+T++S+      T   S F
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSSAAATTTTPTTSLF 509


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 69  KMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 197
           KM  K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 37  KMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 60  ITFKMA-SKAELACVYSALILVDDDVAVTGEKISTILK 170
           IT  M+ S+  + C++SA +++ +D+ + G+    +LK
Sbjct: 259 ITLDMSISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLK 296


>Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 856

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -3

Query: 268 PDPMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMV---EIFSPVTATSSSTRIRAE*T 98
           P+P  V+   +  PS   ANR  +   TS A    MV   ++ S +  T+++T I    T
Sbjct: 473 PNPTFVVCGSSTKPSPNNANRVRRSTITSPADTQDMVAADQMLSNLDPTTTTTTIPKSAT 532

Query: 97  QAN 89
            AN
Sbjct: 533 TAN 535


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 226 SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATS 128
           S+    + G+ GS  +AAA S VEI  P  +TS
Sbjct: 50  SRKKGGKGGKKGSKKSAAAASKVEIPDPYNSTS 82


>AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical
           protein Y60A3A.1 protein.
          Length = 856

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -3

Query: 268 PDPMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMV---EIFSPVTATSSSTRIRAE*T 98
           P+P  V+   +  PS   ANR  +   TS A    MV   ++ S +  T+++T I    T
Sbjct: 473 PNPTFVVCGSSTKPSPNNANRVRRSTITSPADTQDMVAADQMLSNLDPTTTTTTIPKSAT 532

Query: 97  QAN 89
            AN
Sbjct: 533 TAN 535


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 226 SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATS 128
           S+    + G+ GS  +AAA S VEI  P  +TS
Sbjct: 50  SRKKGGKGGKKGSKKSAAAASKVEIPDPYNSTS 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,753,332
Number of Sequences: 27780
Number of extensions: 111624
Number of successful extensions: 262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)