Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C13
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.84 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 343 PNEPPRPSGDATANTTAAPKPIAGNENLIQ 432
           PN  P P+    + TT   +   G++ L+Q
Sbjct: 741 PNASPSPAEQCASTTTITARSPQGSQGLLQ 770


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 211 VQPFSVLPVLQIK*R*STQ 267
           V PF+VLP+L++  R +T+
Sbjct: 182 VTPFTVLPLLKVWGRYTTE 200


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 211 VQPFSVLPVLQIK*R*STQ 267
           V PF+VLP+L++  R +T+
Sbjct: 182 VTPFTVLPLLKVWGRYTTE 200


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 239 SKSSNVNPHKTSMQW 283
           S+S ++N H+  M W
Sbjct: 91  SRSMDLNAHREQMSW 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,829
Number of Sequences: 438
Number of extensions: 2284
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)