Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C12
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 44 1e-05
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 38 0.001
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 27 1.6
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 2.1
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 25 4.7
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 4.7
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 25 6.3
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 25 6.3
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 6.3
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 44.0 bits (99), Expect = 1e-05
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 163 LNLPVEMVDVNFTEMEHLKPEFLKKNPVHTVPVL---EHDDLIIADSHAILMYLFDVYGK 333
L+L E VNF++ E PE L NP VP L ++D I +S AIL+YL D Y
Sbjct: 25 LDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDT 84
Query: 334 DDNL-YPKDVKKRAIVNRMLFFDTA 405
+ + P+D + V + LFF +
Sbjct: 85 ERKISLPRDHPEYYKVIQYLFFQAS 109
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 37.5 bits (83), Expect = 0.001
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 106 LYKIDPSPPARAAMMVCDILNLPVEMVDVNFTEMEHLKPEFLKKNPVHTVPVL---EHDD 276
LY P ++ LNL E + +F + E E L NP VP L +++D
Sbjct: 6 LYSHAGGPNPWKVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVDHKNND 65
Query: 277 LIIADSHAILMYLFDVYGKD 336
I +S AIL+YL D Y D
Sbjct: 66 YTIWESDAILIYLADKYDTD 85
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 220 PEFLKKNPVHTVPVLEHDDLIIADSHAILMYLFDVYGKDDNLYPKDVKKRAIVNRMLFFD 399
P + K +P+ P++ D + +S AIL +L YG +DV + + F
Sbjct: 40 PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFS 99
Query: 400 TAIL 411
A L
Sbjct: 100 EASL 103
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 112 KIDPSPPARAAMMVCDILNLPVEMVDVNFTEMEHLKPEFLKKNP---VHTVPVLE 267
K P PP R ++ + I N PV+ V + H P F++ +P + P+L+
Sbjct: 118 KPHPLPPKRVSLGIPSISNPPVDTVISDSPTSPH-PPSFVQPHPPYGIFAAPILD 171
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 250 TVPVLEHDDLIIADSHAILMYLFDVYGKDDNLYPKDVKKRA 372
T+ LEHDD + H L + V DD++ K + A
Sbjct: 93 TIDTLEHDDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEA 133
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 258 RYRVYWI--FLQKLRLQMFHFCKINIYHF 178
R VYWI FL+++ H ++ +YHF
Sbjct: 83 RVVVYWIRVFLKRIYTFFVHSARVFLYHF 111
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 349 PKDVKKRAIVNRMLFFD 399
PK + KR+I++RML +D
Sbjct: 70 PKSMLKRSIIHRMLVYD 86
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 136 RAAMMVCDILNLPVEMV---DVNFTEMEHLKPEFLKKNPVHTVPVLEHDDLIIADS 294
R A + + LP+ +V + N ++E LK + + +P EH D+I+ D+
Sbjct: 361 RIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHLDIIMGDT 416
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 285 DNKVVVF*HRYRVYWIFLQKLRLQMFHFCKINIYHFYGK 169
+ K+ F H + IFL++ R Q+FH C ++ Y +
Sbjct: 454 EQKITAFKHAHIYDKIFLEEARKQVFH-CFLSFIDSYNE 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,019
Number of Sequences: 5004
Number of extensions: 44383
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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