Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C11
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   4.1  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   5.4  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    24   9.4  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    24   9.4  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 295 ILEWYDFYFRIIILLFKKIYISKMSV 218
           I +WY F+F + + L + I++S  S+
Sbjct: 209 ISQWYFFHFNLQLQLLRVIFLSTYSL 234


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -3

Query: 328 HFTFVFLQINIILEWYDFYFRIIILLFKKIYISKMSVSLDFHWRCNQNVE 179
           H   V ++ NII  +Y  Y +I + +FK++  + + + + FH+   Q ++
Sbjct: 201 HKLEVLIRKNII-PYYRAYKQIPLKIFKRLQKNYVRMLIPFHYPTYQRIQ 249


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 143  KPQNKHKHTFADSLVH 96
            KP++ H  TFAD  +H
Sbjct: 1005 KPEDNHLLTFADDTIH 1020


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 169 LFEEIKSN*NHKINTSTLLQ 110
           L +E++SN   KIN STL Q
Sbjct: 48  LVQELRSNIKKKINVSTLPQ 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,049
Number of Sequences: 5004
Number of extensions: 24049
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)