Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C11
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    30   0.72 
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   1.3  
01_05_0345 + 21181114-21181222,21181306-21181367,21181505-211815...    26   8.9  

>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 10/36 (27%), Positives = 25/36 (69%)
 Frame = -3

Query: 352 QDGGRT*PHFTFVFLQINIILEWYDFYFRIIILLFK 245
           + G ++  H  F+++ +NI+ E+Y+ ++++ + LFK
Sbjct: 804 ETGNQSSQHGWFIYMPLNILQEYYEPFWQLWVSLFK 839


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 108  LTCPCQVMFSLLTRQILQTVKIIYFTVSHNT-SSASC 1
            +TCPC   ++L     + TV+ I+  + +N+ +SA+C
Sbjct: 1377 VTCPCNTTWALENAMAMDTVESIHGDIGNNSNNSAAC 1413


>01_05_0345 +
           21181114-21181222,21181306-21181367,21181505-21181588,
           21182069-21182123,21182843-21182969,21183129-21183179,
           21183275-21183374
          Length = 195

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 286 WYDFYFRIIILLFKKIYISKM-SVSLDFHW 200
           WY FY  I++ LF   Y+ ++  +  D  W
Sbjct: 127 WYSFYVSILVALFWTYYLLRLPRIRWDVAW 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,280,090
Number of Sequences: 37544
Number of extensions: 122851
Number of successful extensions: 201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)