Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C11
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    31   0.28 
Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z68119-3|CAA92194.1|  131|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    27   4.5  

>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -3

Query: 319 FVFLQINIILEWYDFYFRIIILLFKKIYISKMS-VSLDFHWR 197
           FV+  +N +++ Y ++F+  ILL+   YI  ++ +++ F +R
Sbjct: 73  FVYFSLNSLIQEYPYFFQFAILLYASFYIVILAIIAVQFAFR 114


>Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical
           protein K04G2.10 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 372 TTVTTANKMADEHNLTLRLFFYKLT*FWNGMIFIFVLLFYYLKKSTYLR 226
           +T T  N+      L   +F++    FWN +IFIF   F Y + ST  R
Sbjct: 53  STATVLNQTLPIFVLVFLIFYF----FWNTLIFIF---FIYFRNSTLKR 94


>Z68119-3|CAA92194.1|  131|Caenorhabditis elegans Hypothetical
           protein T18D3.5 protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 115 KVCLCLFCGFNWILFLQTIINAQRSDYNANENQ 213
           K+C CL C    I+   T+ NAQ   ++  EN+
Sbjct: 3   KLCNCLTCLLIIIILSITLANAQDEQHSPRENE 35


>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.9 protein.
          Length = 1142

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 161 RNKIQLKPQNKHKHTFADSLVHVK*CFRY*HVKYYKQLRLF 39
           + + ++KP+  H +T   SLVH+  C    ++ Y+K+   F
Sbjct: 525 QGETEIKPRPNHNYTDDGSLVHILNCVNP-YLNYFKKYIFF 564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,910,329
Number of Sequences: 27780
Number of extensions: 138811
Number of successful extensions: 365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)