Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C11
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.30 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   0.93 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 8/12 (66%), Positives = 10/12 (83%), Gaps = 2/12 (16%)
 Frame = +1

Query: 343 RHLV--CCCYCC 372
           RH+V  CCC+CC
Sbjct: 5   RHVVMSCCCWCC 16


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 106 ESAKVCLCLFCGFNWILFLQTIINAQRSDYNANEN 210
           +  K+ L +F G   I+F  T +N +  DY  N N
Sbjct: 17  KKVKIVLLIFYGS--IMFSMTQVNKEECDYYQNLN 49


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -3

Query: 304 INIILEWYDFYFRIIILLFKKIYISKMSVSLDFHW 200
           +  + +W + YF  +  +F +I+     + L  HW
Sbjct: 226 VRYVSQWEEVYFLNMASVFMRIFNLICMMLLIGHW 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,082
Number of Sequences: 438
Number of extensions: 1649
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)