Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C10
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0149 - 15108796-15109353,15109590-15110756,15111571-151116...    29   1.5  
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049...    29   2.0  
09_04_0650 - 19214589-19215106,19215839-19215935,19216100-192161...    29   2.6  
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934...    28   4.6  
07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072...    27   6.1  
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572...    27   6.1  
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987...    27   8.1  

>09_04_0149 -
           15108796-15109353,15109590-15110756,15111571-15111640,
           15113747-15113808
          Length = 618

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -1

Query: 443 ESSVVMRPTSLHNEWQVSTKSVGECVK*DANKRPLNPATAKNSASKDLGGGSHCNHSFMA 264
           +S +V++ T     W    K +G C+   A+K  ++PA    S S    G S C     +
Sbjct: 139 DSIIVLQSTKALLPWSEELKVIGRCIDAIASKTSVDPANVTWSYSHSRKGMS-CTEIVES 197

Query: 263 IAATSI 246
              TSI
Sbjct: 198 TGRTSI 203


>03_04_0020 -
           16504322-16504654,16504758-16504785,16504937-16504989,
           16505377-16505463,16505636-16505704,16506071-16506145,
           16507040-16507210,16507693-16507793,16508062-16508139,
           16508492-16508648,16508737-16509006,16509369-16509485,
           16510250-16510339,16510417-16510629,16510742-16510891,
           16511929-16512342
          Length = 801

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 350 KRPLNPATAKNSASKDLGGGSHCNHSFMAIAATSIKGDY 234
           K  L    +K+      G GS+CNH F+ + A+  KG Y
Sbjct: 452 KEQLATRGSKSPRISTFGLGSYCNHYFLRMLASIGKGHY 490


>09_04_0650 -
           19214589-19215106,19215839-19215935,19216100-19216189,
           19216323-19216436,19217126-19217201,19217329-19217618
          Length = 394

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 356 ANKRPLNPATAKNSASKDLGGGSHCNH 276
           A+++P N   A N  SK   G +HC+H
Sbjct: 84  ASRKPANTILAVNRQSKKKPGANHCHH 110


>03_04_0157 +
           17791540-17791681,17792809-17792908,17793386-17793477,
           17793562-17793620,17794135-17795637,17796478-17796720,
           17796831-17797145,17797571-17797573,17798399-17798638,
           17798975-17799259,17799335-17799556,17800105-17800266,
           17800411-17800545,17802452-17802688,17802787-17802960,
           17803692-17803934
          Length = 1384

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 446 YESSVVMRPTSLHNEWQVSTKSVGECVK*DANKRPLNPATAKNSASKDLGGGSH 285
           Y       P +LH    +STK+    +  DA+    +P  A    SKD+ G +H
Sbjct: 639 YTDDTPTPPNTLHAALVLSTKAHARILSIDASLAKSSPGFAGLFLSKDVPGANH 692


>07_03_0312 +
           16606724-16606796,16606885-16607015,16607105-16607274,
           16607365-16607511,16608248-16608299,16608725-16608899,
           16609523-16609605,16610528-16610740,16611850-16611981,
           16612517-16612652,16613218-16613273,16613868-16613910,
           16613990-16614435
          Length = 618

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 356 ANKRPLNPATAKNSASKDLGGGSHCNHSFMAIAATSIKGDYRL 228
           A++R  NP   K   +KD     H +H FM IA  S    +RL
Sbjct: 283 ASQRAANPNFDKLYITKDSSCTGHADHLFMDIAVYSRNRCFRL 325


>07_01_0747 -
           5724586-5724648,5725229-5725309,5725564-5725656,
           5725775-5725929,5726023-5726131,5726291-5726481,
           5727463-5727614,5728453-5728728,5729415-5729587,
           5730023-5730298,5730839-5730958,5731051-5731176,
           5731629-5731970
          Length = 718

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 256 AAMAMKEWLQWLPPPRSLLALFLAVAGFSGRLFA 357
           AA+ ++  L  L PPR     FLA AG  GR  A
Sbjct: 26  AALPLRRALPLLLPPRRRRLCFLAAAGGDGRAVA 59


>11_06_0249 +
           21697863-21697923,21698119-21698128,21698160-21698766,
           21699011-21699090,21699182-21699263,21699357-21699428,
           21700128-21700406
          Length = 396

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 392 STKSVGECVK*DANKRPLNPATAKNSASK 306
           S  S+ +C     N +P  PATAK +ASK
Sbjct: 347 SLDSICKCSSSSRNGKPQQPATAKPAASK 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,755,733
Number of Sequences: 37544
Number of extensions: 280001
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)