Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C10
         (488 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126110-1|AAI26111.1|  804|Homo sapiens TSR1, 20S rRNA accumula...    29   8.6  
BC110851-1|AAI10852.1|  804|Homo sapiens TSR1, 20S rRNA accumula...    29   8.6  
BC019090-1|AAH19090.2|  759|Homo sapiens TSR1 protein protein.         29   8.6  
AK001396-1|BAA91667.1|  656|Homo sapiens protein ( Homo sapiens ...    29   8.6  
AB037822-1|BAA92639.1|  853|Homo sapiens KIAA1401 protein protein.     29   8.6  

>BC126110-1|AAI26111.1|  804|Homo sapiens TSR1, 20S rRNA
           accumulation, homolog (S. cerevisiae) protein.
          Length = 804

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 52  LQTNISIRKSNYKRVLPKLLYN*YVP*PRLW 144
           L++  ++  + YKRV PK  Y+ YVP P  W
Sbjct: 759 LKSQDTVLMNLYKRVFPKWTYDPYVPEPVPW 789


>BC110851-1|AAI10852.1|  804|Homo sapiens TSR1, 20S rRNA
           accumulation, homolog (S. cerevisiae) protein.
          Length = 804

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 52  LQTNISIRKSNYKRVLPKLLYN*YVP*PRLW 144
           L++  ++  + YKRV PK  Y+ YVP P  W
Sbjct: 759 LKSQDTVLMNLYKRVFPKWTYDPYVPEPVPW 789


>BC019090-1|AAH19090.2|  759|Homo sapiens TSR1 protein protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 52  LQTNISIRKSNYKRVLPKLLYN*YVP*PRLW 144
           L++  ++  + YKRV PK  Y+ YVP P  W
Sbjct: 714 LKSQDTVLMNLYKRVFPKWTYDPYVPEPVPW 744


>AK001396-1|BAA91667.1|  656|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10534 fis, clone NT2RP2001065. ).
          Length = 656

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 52  LQTNISIRKSNYKRVLPKLLYN*YVP*PRLW 144
           L++  ++  + YKRV PK  Y+ YVP P  W
Sbjct: 611 LKSQDTVLMNLYKRVFPKWTYDPYVPEPVPW 641


>AB037822-1|BAA92639.1|  853|Homo sapiens KIAA1401 protein protein.
          Length = 853

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 52  LQTNISIRKSNYKRVLPKLLYN*YVP*PRLW 144
           L++  ++  + YKRV PK  Y+ YVP P  W
Sbjct: 808 LKSQDTVLMNLYKRVFPKWTYDPYVPEPVPW 838


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,742,879
Number of Sequences: 237096
Number of extensions: 1503348
Number of successful extensions: 2738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2738
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)