Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C10
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.00 
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   1.00 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.00
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 68  LSENQITSVCYQNYCTIDMCHNHGCGRCVYK 160
           +++N +    Y N C IDM     C  C  K
Sbjct: 215 ITKNAVYQCKYGNNCEIDMYMRRKCQECRLK 245


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.8 bits (49), Expect = 1.00
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 68  LSENQITSVCYQNYCTIDMCHNHGCGRCVYK 160
           +++N +    Y N C IDM     C  C  K
Sbjct: 12  ITKNAVYQCKYGNNCEIDMYMRRKCQECRLK 42


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 114 QLICAITTAVVGVFTKQECCDRYC 185
           +++C       G  TK  CC  YC
Sbjct: 440 EILCPHFNVTDGETTKTFCCKGYC 463


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 15   TKLAHRHKYRSTITNKHIYPKIKL 86
            T   HRH      +N H+Y  +K+
Sbjct: 984  TPFEHRHFISGIDSNLHVYAPLKI 1007


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = +2

Query: 308 CWHCF 322
           CWHCF
Sbjct: 606 CWHCF 610


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 80 DFRIDMFV 57
          DFR+DMFV
Sbjct: 31 DFRVDMFV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,532
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)