Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C09
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 218 1e-57
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 210 3e-55
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 128 2e-30
02_04_0580 + 24065830-24065967,24066163-24067425 30 0.99
08_02_1362 + 26406710-26408530 28 4.0
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 27 5.3
08_02_0628 + 19459198-19459674,19459751-19459894,19460191-194604... 27 7.0
03_06_0022 + 31085819-31086305,31086448-31087334 27 7.0
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 27 7.0
09_02_0154 + 5055946-5058721,5058754-5058770 27 9.2
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 27 9.2
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 218 bits (533), Expect = 1e-57
Identities = 96/142 (67%), Positives = 119/142 (83%)
Frame = +2
Query: 17 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGK 196
RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +
Sbjct: 103 RKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQ 162
Query: 197 RVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTI 376
R+P+ +N +IE+ L K +IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK
Sbjct: 163 RIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRN 222
Query: 377 HYVDGGDFGNREDKVNELLRRM 442
HYV+GGD GNRED +NEL+RRM
Sbjct: 223 HYVEGGDAGNREDYINELIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 210 bits (514), Expect = 3e-55
Identities = 96/148 (64%), Positives = 120/148 (81%), Gaps = 6/148 (4%)
Frame = +2
Query: 17 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGK 196
RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +
Sbjct: 102 RKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQ 161
Query: 197 RVPITSNSLIEKR------LSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG 358
R+P+T+N +IE+ L K +IIC+EDL+HEI TVG FK A+NFLWPFKL P GG
Sbjct: 162 RIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGG 221
Query: 359 WRKKTIHYVDGGDFGNREDKVNELLRRM 442
+KK HYV+GGD GNRE+ +NEL+RRM
Sbjct: 222 LKKKRNHYVEGGDAGNRENYINELIRRM 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 128 bits (309), Expect = 2e-30
Identities = 59/129 (45%), Positives = 88/129 (68%)
Frame = +2
Query: 11 NVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLN 190
++R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V++L+YK+G L+
Sbjct: 103 HMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLD 162
Query: 191 GKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKK 370
+ P+TSN LIEK L + IIC+EDL+HEI +VG F+ ASNFL PFKL P + K
Sbjct: 163 KEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMK 222
Query: 371 TIHYVDGGD 397
+ DG +
Sbjct: 223 KKPFKDGAE 231
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 29.9 bits (64), Expect = 0.99
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = +2
Query: 86 TVNMLRIAE--PYIAWGYPNLKSVRELVYKRG--FAKLNGKRVPITSNSLIEKRLSKQNI 253
T+ +L +A+ P A G+ + E+ + FA NG+ + S + I+ L
Sbjct: 71 TMAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARC 130
Query: 254 ICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 367
V +L +E+F +S F++P+K+ T G K
Sbjct: 131 TIVSELSNEVFD-SYVLSESSLFVYPYKIVIKTCGTTK 167
>08_02_1362 + 26406710-26408530
Length = 606
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 439 SPEELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDS--KYLMDEI 266
SP E+VD + AV + A + LA ++ VQ P+ V LL S + +D
Sbjct: 75 SPSEMVDYLYAVDDAIAATALQGELASRAAETVQAAMPRLEEEVRALLGSSARRLSLDSF 134
Query: 265 LNADD 251
+ DD
Sbjct: 135 EDLDD 139
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -3
Query: 240 LSLFSMSELEVIGTRFPFSLAKPRLYTNSRTLFKLG*PHAI 118
L L S+ LE + RFP L K + L KL PH I
Sbjct: 310 LKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVI 350
>08_02_0628 +
19459198-19459674,19459751-19459894,19460191-19460431,
19460616-19461116,19461226-19461635
Length = 590
Score = 27.1 bits (57), Expect = 7.0
Identities = 36/129 (27%), Positives = 50/129 (38%)
Frame = -2
Query: 409 AVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNADDVLFAKSL 230
A+ A V + L+PT E P V C ++++ S Y A + L
Sbjct: 134 AILVFVARKVHRKWLSPTQCLPAHLEGPGGVWCDVDVVEFSYY------GAPAPTPKEQL 187
Query: 229 LDE*VGGDRDTLPVQFGETAFVHQLSDTLQVGVAPCNIGLSDTKHVHCGLVETNEHAVVD 50
DE V G R + P G + V L +G I S T + G + TN H VD
Sbjct: 188 YDELVDGLRGSDP-SIGSGSQVASLETYGTLGA----IVKSRTGNKQVGFL-TNRHVAVD 241
Query: 49 LTQPEQLQY 23
L P Q +
Sbjct: 242 LDYPNQKMF 250
>03_06_0022 + 31085819-31086305,31086448-31087334
Length = 457
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 409 AVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCV 308
A+ V V V L AP +SR+ WP++ TC+
Sbjct: 229 ALALVPNVLPVGPLEAPATSRLAGHFWPEDTTCL 262
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 292 DSKYLMDEILNADD-VLFAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTLQVGVA 128
D K + ++ N D+ V + +++ V GD D P G LSDT+ + A
Sbjct: 380 DGKKEIVKVNNPDETVAYGAAVIGRHVAGDDDDKPTMLGPLDLPSFLSDTISIETA 435
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 330 GHRKLLAYLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVI 205
G RK+ +++ F V SW++ +T F LL + S+ +++
Sbjct: 555 GSRKIRSFILFDEEVQFSWIQKATS-NFRLLRVLSLRYAKIV 595
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 342 FSLNGHRKLLAYLNFSP-TVNISWMRSSTQMMFCLLSL 232
F+L+ H K ++ ++FSP T N+ S C+ SL
Sbjct: 375 FTLHAHEKAVSSISFSPSTPNVKLWDLSNNQPSCIASL 412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,896
Number of Sequences: 37544
Number of extensions: 214388
Number of successful extensions: 658
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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