Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C08
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   186   1e-47
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   184   4e-47
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...   103   1e-22
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356...    31   0.52 
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37...    29   3.7  
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463...    28   6.5  

>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  186 bits (453), Expect = 1e-47
 Identities = 85/159 (53%), Positives = 115/159 (72%)
 Frame = +2

Query: 119 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 298
           VPESV               +  +  +  SI+ RK IF RA+QY +EY  +E++ ++L R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 299 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 478
           +AR +G +YV  E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70  EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129

Query: 479 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSN 595
           R  EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T+N
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNN 168


>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  184 bits (449), Expect = 4e-47
 Identities = 85/163 (52%), Positives = 116/163 (71%)
 Frame = +2

Query: 107 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 286
           K   VPESV               +  L  +  +++ RK IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 287 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 466
           +L R+AR +G +YV  EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67  QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126

Query: 467 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSN 595
           +NMLR  EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ +N
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNN 169


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score =  103 bits (247), Expect = 1e-22
 Identities = 58/171 (33%), Positives = 94/171 (54%), Gaps = 3/171 (1%)
 Frame = +2

Query: 92  KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIK 271
           +E +++LP V E+V               +    +R       K   KR E +V+E+R K
Sbjct: 3   EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62

Query: 272 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGV 442
           E D +R+  + + R     P E   +KL F IRI G   + P +R++L+  RL Q+  GV
Sbjct: 63  ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120

Query: 443 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSN 595
           F++   AT+  L + EP+I +G+PNLK+V++L+YK+G   L+ +  P+TSN
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSN 171


>02_05_0756 -
           31534011-31534141,31534235-31535338,31535448-31535692,
           31535789-31535940,31536051-31536158
          Length = 579

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 373 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 218
           D TN  +KC     G+   A++ ++S QS  I +LDA ++    G  ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433


>11_01_0049 -
           375049-375342,375596-375660,375907-375956,376492-376541
          Length = 152

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 213 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 317
           R+G KS+  P N  K+   R +M S+ +  L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142


>10_08_0139 +
           15145310-15145622,15145820-15145881,15145975-15146355,
           15146413-15146929,15147031-15147161
          Length = 467

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 373 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 218
           DTTN  +K      G+   A++ ++S +S  I +LDA ++    G  ++ FP
Sbjct: 269 DTTNATNKLCKGPQGNQFAASLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,332
Number of Sequences: 37544
Number of extensions: 330545
Number of successful extensions: 865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)