Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C07
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   167   3e-43
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   167   3e-43
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   167   3e-43
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    51   5e-08
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    42   4e-05
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    36   0.001
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   0.48 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   1.5  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   1.5  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   1.5  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   2.0  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   4.5  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.5  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    24   6.0  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    24   6.0  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    24   6.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    24   7.9  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   7.9  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  167 bits (407), Expect = 3e-43
 Identities = 72/109 (66%), Positives = 89/109 (81%)
 Frame = +3

Query: 27  EGDNMLEPSTKMPWFKGWLVERKEGKAEGTCLIEALNAILPPARPTDKALRLPLQDVYKI 206
           +GDNM+EP+T MPW++GW  E K G  +G  L+EA+++I PPARPTDK LRLPLQDVYKI
Sbjct: 195 QGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKI 254

Query: 207 GGIGTVPVGRVDTGILNAGTVVVIAPANITTEVKSVEMHHEALQEAVPG 353
           GGIGTVPVGRV+TG++  G +V  APA +TTEVKSVEMHHE+L   +PG
Sbjct: 255 GGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPG 303


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  167 bits (407), Expect = 3e-43
 Identities = 72/109 (66%), Positives = 89/109 (81%)
 Frame = +3

Query: 27  EGDNMLEPSTKMPWFKGWLVERKEGKAEGTCLIEALNAILPPARPTDKALRLPLQDVYKI 206
           +GDNM+EP+T MPW++GW  E K G  +G  L+EA+++I PPARPTDK LRLPLQDVYKI
Sbjct: 195 QGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKI 254

Query: 207 GGIGTVPVGRVDTGILNAGTVVVIAPANITTEVKSVEMHHEALQEAVPG 353
           GGIGTVPVGRV+TG++  G +V  APA +TTEVKSVEMHHE+L   +PG
Sbjct: 255 GGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPG 303


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  167 bits (407), Expect = 3e-43
 Identities = 72/109 (66%), Positives = 89/109 (81%)
 Frame = +3

Query: 27  EGDNMLEPSTKMPWFKGWLVERKEGKAEGTCLIEALNAILPPARPTDKALRLPLQDVYKI 206
           +GDNM+EP+T MPW++GW  E K G  +G  L+EA+++I PPARPTDK LRLPLQDVYKI
Sbjct: 195 QGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKI 254

Query: 207 GGIGTVPVGRVDTGILNAGTVVVIAPANITTEVKSVEMHHEALQEAVPG 353
           GGIGTVPVGRV+TG++  G +V  APA +TTEVKSVEMHHE+L   +PG
Sbjct: 255 GGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPG 303


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 51.2 bits (117), Expect = 5e-08
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
 Frame = +3

Query: 114 TCLIEALNAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAGTVVVIA--P 284
           T L+EA+++ +  P R TD    + ++DV+ I G GTV  GRV+ G L  G  + I    
Sbjct: 232 TKLMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYG 291

Query: 285 ANITTEVKSVEMHHEALQEAVPG 353
           +++ T V  +EM  + L  AV G
Sbjct: 292 SHLKTTVTGIEMFKKQLDAAVAG 314


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 41.5 bits (93), Expect = 4e-05
 Identities = 24/69 (34%), Positives = 37/69 (53%)
 Frame = +3

Query: 108 EGTCLIEALNAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAGTVVVIAPA 287
           +G  L+ AL+ ++PP +P  K LRL + DVY+     TV  GRV+ G +    V+    +
Sbjct: 383 KGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSS 441

Query: 288 NITTEVKSV 314
                VK+V
Sbjct: 442 QEDAYVKNV 450


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 18/69 (26%), Positives = 37/69 (53%)
 Frame = +3

Query: 108 EGTCLIEALNAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAGTVVVIAPA 287
           +G  L+E L+++    R  +    +P+   YK   +GT+  G+++ G +   + V++ P 
Sbjct: 447 QGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPI 504

Query: 288 NITTEVKSV 314
           N T EV ++
Sbjct: 505 NQTLEVTAI 513


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 343 ASCRASWCISTDLTSVVMLAGAITTTVPAFRIPVSTLPTGTVPIPPILYTSC 188
           ASC  S  + +  +SVV+ +   T TV ++   VST  TGTV +P     +C
Sbjct: 75  ASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 117  CLIEALNAILPPARPTDKALRLPLQD 194
            CLIE  NAILP    +DK   L + +
Sbjct: 1349 CLIEKSNAILPHGSTSDKLFLLEIPE 1374


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 316 STDLTSVVMLAGAITTTVPAFRIPVSTLPTGT--VPIPPIL 200
           ++DLT+   L    +T+  ++ +  +  PT T  +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = +3

Query: 6   RPRSIRHEGD-----NMLEPSTKMPWF 71
           RPR  R  G      N LEP TK PW+
Sbjct: 133 RPRHYRGSGSAPLFGNFLEPLTKTPWY 159


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 146 KDGVEGLYKACTFSLSFFTLNQPSLEPWHF 57
           ++ + GLYKA   S S  T +  +L P HF
Sbjct: 52  REHIRGLYKAGVTSTSLNTESSSTLGPHHF 81


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 181 FPCKTYTKSAVLEQYPW 231
           FPCK    S  L QYP+
Sbjct: 173 FPCKASAHSVPLSQYPY 189


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 268 TVPAFRIPVSTLPTGTVP 215
           T PAF+ P S+LP   VP
Sbjct: 50  TPPAFKTPYSSLPYNLVP 67


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 277 ITTTVPAFRIPVSTLPTGTVPIPPIL 200
           +  T  A   P S LPT  VP+P I+
Sbjct: 658 LANTQGASNPPTSALPTVPVPLPSII 683


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 30  GDNMLEPSTKMPWFKGWLVERKEGK 104
           GD +L  +   PW+   L+ RKE K
Sbjct: 53  GDRILVKAPGYPWWPALLLRRKETK 77


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 191 LQGKTESLVSGASRRKDGVEGLYKACTFSLSFFTLNQ-PSLEP 66
           L G  ++   G + RK+    +Y  C FSL+  +L Q P++EP
Sbjct: 253 LLGTQDADSGGFADRKEDATDVYHTC-FSLAGLSLLQFPNIEP 294


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 127 SIRHVPSAFPSLRSTNHPLNHGILVDGSNMLS 32
           S+   PS      +TN PL+H  +V  SN  S
Sbjct: 158 SVNSPPSYGIMASATNQPLSHPTIVPSSNSSS 189


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 141 ILPPARPTDKALRLPLQDVYKIGGIGTVPV 230
           I P A+P+D+ L +       +  +GT+PV
Sbjct: 507 IEPEAKPSDETLTVRSSRDLSVHNVGTLPV 536


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 322 CISTDLTSVVMLAGAITTTVPAF--RIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 158
           CIS+ L S   LA ++   +P+F  + P+ TLP+ T   P     S R  R     G
Sbjct: 358 CISSFLQSSNELASSLKKQLPSFLAQTPL-TLPSNTKTPPASARQSSRRTRSTSGKG 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,885
Number of Sequences: 5004
Number of extensions: 27203
Number of successful extensions: 96
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)