Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C07
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 182 8e-47
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 182 8e-47
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 182 8e-47
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 49 8e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 40 4e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 40 4e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 38 0.003
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 38 0.003
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 38 0.003
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 35 0.019
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 35 0.019
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 32 0.13
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 32 0.13
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.23
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 31 0.23
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.23
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 1.6
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 1.6
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 28 1.6
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 28 1.6
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 28 2.2
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 28 2.2
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 28 2.2
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 28 2.2
U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical pr... 27 2.8
AL132876-29|CAF31497.1| 840|Caenorhabditis elegans Hypothetical... 27 5.0
AL132876-27|CAD21658.1| 906|Caenorhabditis elegans Hypothetical... 27 5.0
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 26 6.6
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 26 6.6
AF039047-5|AAY86265.1| 188|Caenorhabditis elegans Hypothetical ... 26 6.6
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF043693-2|AAB97535.2| 351|Caenorhabditis elegans Hypothetical ... 26 8.7
AF039720-6|AAB96700.1| 347|Caenorhabditis elegans Hypothetical ... 26 8.7
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 182 bits (442), Expect = 8e-47
Identities = 82/108 (75%), Positives = 92/108 (85%)
Frame = +3
Query: 30 GDNMLEPSTKMPWFKGWLVERKEGKAEGTCLIEALNAILPPARPTDKALRLPLQDVYKIG 209
GDNMLE S+ MPWFKGW VERKEG A G L+EAL++I+PP RPTD+ LRLPLQDVYKIG
Sbjct: 164 GDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIG 223
Query: 210 GIGTVPVGRVDTGILNAGTVVVIAPANITTEVKSVEMHHEALQEAVPG 353
GIGTVPVGRV+TGI+ G VV AP N+TTEVKSVEMHHE+L EAVPG
Sbjct: 224 GIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPG 271
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 182 bits (442), Expect = 8e-47
Identities = 82/108 (75%), Positives = 92/108 (85%)
Frame = +3
Query: 30 GDNMLEPSTKMPWFKGWLVERKEGKAEGTCLIEALNAILPPARPTDKALRLPLQDVYKIG 209
GDNMLE S+ MPWFKGW VERKEG A G L+EAL++I+PP RPTD+ LRLPLQDVYKIG
Sbjct: 198 GDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIG 257
Query: 210 GIGTVPVGRVDTGILNAGTVVVIAPANITTEVKSVEMHHEALQEAVPG 353
GIGTVPVGRV+TGI+ G VV AP N+TTEVKSVEMHHE+L EAVPG
Sbjct: 258 GIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPG 305
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 182 bits (442), Expect = 8e-47
Identities = 82/108 (75%), Positives = 92/108 (85%)
Frame = +3
Query: 30 GDNMLEPSTKMPWFKGWLVERKEGKAEGTCLIEALNAILPPARPTDKALRLPLQDVYKIG 209
GDNMLE S+ MPWFKGW VERKEG A G L+EAL++I+PP RPTD+ LRLPLQDVYKIG
Sbjct: 198 GDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIG 257
Query: 210 GIGTVPVGRVDTGILNAGTVVVIAPANITTEVKSVEMHHEALQEAVPG 353
GIGTVPVGRV+TGI+ G VV AP N+TTEVKSVEMHHE+L EAVPG
Sbjct: 258 GIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPG 305
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 49.2 bits (112), Expect = 8e-07
Identities = 29/63 (46%), Positives = 33/63 (52%)
Frame = +1
Query: 31 EITCWSRPPKCHGSRDGWLSVKKERLKVHAL*RPSTPSFRLLAPLTRLSVFPCKTYTKSA 210
E TC P CHGSRDG L+ +KE L R TPS A LT SVF + T+S
Sbjct: 181 ETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCTRSE 240
Query: 211 VLE 219
LE
Sbjct: 241 ELE 243
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +3
Query: 108 EGTCLIEALNAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAGTVVVIAPA 287
+G CL+E +++ + P P+D LR+ + DV K+ V G++++G + V I +
Sbjct: 371 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 430
Query: 288 NITTEVK 308
VK
Sbjct: 431 VTAATVK 437
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +3
Query: 108 EGTCLIEALNAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAGTVVVIAPA 287
+G CL+E +++ + P P+D LR+ + DV K+ V G++++G + V I +
Sbjct: 389 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 448
Query: 288 NITTEVK 308
VK
Sbjct: 449 VTAATVK 455
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 37.5 bits (83), Expect = 0.003
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +3
Query: 120 LIEAL-NAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAG-TVVVIAPANI 293
L+E L N + P R ++ + VY I G GTV G+++ GIL G + ++
Sbjct: 233 LLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKD 292
Query: 294 TTEVKSV----EMHHEALQEAVPG 353
T VKSV E + + +A PG
Sbjct: 293 GTTVKSVISGLESFRKTVDQAEPG 316
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 37.5 bits (83), Expect = 0.003
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +3
Query: 120 LIEAL-NAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAG-TVVVIAPANI 293
L+E L N + P R ++ + VY I G GTV G+++ GIL G + ++
Sbjct: 234 LLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKD 293
Query: 294 TTEVKSV----EMHHEALQEAVPG 353
T VKSV E + + +A PG
Sbjct: 294 GTTVKSVISGLESFRKTVDQAEPG 317
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 37.5 bits (83), Expect = 0.003
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +3
Query: 120 LIEAL-NAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAG-TVVVIAPANI 293
L+E L N + P R ++ + VY I G GTV G+++ GIL G + ++
Sbjct: 234 LLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKD 293
Query: 294 TTEVKSV----EMHHEALQEAVPG 353
T VKSV E + + +A PG
Sbjct: 294 GTTVKSVISGLESFRKTVDQAEPG 317
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 34.7 bits (76), Expect = 0.019
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 120 LIEALNAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAGTVVVIA--PANI 293
LI+AL+++ P R +P+ I G GTV VG ++ G+L G V I +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 294 TTEVKSVEMHHEALQEAVPG 353
T +++ ++++E G
Sbjct: 282 QTTASDIQVFGKSVKEVRAG 301
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 34.7 bits (76), Expect = 0.019
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 120 LIEALNAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAGTVVVIA--PANI 293
LI+AL+++ P R +P+ I G GTV VG ++ G+L G V I +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 294 TTEVKSVEMHHEALQEAVPG 353
T +++ ++++E G
Sbjct: 282 QTTASDIQVFGKSVKEVRAG 301
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 349 GTASCRASWCISTDLTSVVMLAGAITTTVPAFRIPVSTLPTGTVPIPPIL 200
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 268 TVPAFRIPVSTLPTGTVP--IPPILYT 194
T+P ++P+ TLP T P +PP+ T
Sbjct: 351 TLPPVQVPIQTLPPQTRPPQLPPVQIT 377
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 349 GTASCRASWCISTDLTSVVMLAGAITTTVPAFRIPVSTLPTGTVPIPPIL 200
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 268 TVPAFRIPVSTLPTGTVP--IPPILYT 194
T+P ++P+ TLP T P +PP+ T
Sbjct: 448 TLPPVQVPIQTLPPQTRPPQLPPVQIT 474
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +3
Query: 141 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAGTVVVIAPANITTEVKSVEM 320
I P R + + + + I G GTV G V G+L T + N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 321 HHEALQEAVPG 353
+ + + G
Sbjct: 251 WKQRVGQVAAG 261
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +3
Query: 141 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILNAGTVVVIAPANITTEVKSVEM 320
I P R + + + + I G GTV G V G+L T + N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 321 HHEALQEAVPG 353
+ + + G
Sbjct: 210 WKQRVGQVAAG 220
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.23
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 346 TASCRASWCISTDLTSVVMLAGAITTTVPAFR--IPVSTLPTGTVPIPPILY 197
+ S R S +S D T V + + +TVP + VST PT +PPI Y
Sbjct: 49 STSERTSRSVSPDSTPVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 28.3 bits (60), Expect = 1.6
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +3
Query: 186 LQDVYKIGGIGTVPVGRVDTGILNAGTVVVIAPAN 290
+ D+Y + G+GT+ G + +G + ++++ P +
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 412
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 1.6
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +3
Query: 186 LQDVYKIGGIGTVPVGRVDTGILNAGTVVVIAPAN 290
+ D+Y + G+GT+ G + +G + ++++ P +
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 411
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 161 GASRRKDGVEGLYKACTFSLSFFTLNQPSLEPWHFGGRLQHVISLVPNR 15
G K +E A ++ T N+P L FGG +HV L P++
Sbjct: 440 GGQLHKILIESKRSAEKYATEMLTDNEPILSDMEFGGDGKHVYILTPSK 488
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
protein.
Length = 1951
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 161 GASRRKDGVEGLYKACTFSLSFFTLNQPSLEPWHFGGRLQHVISLVPNR 15
G K +E A ++ T N+P L FGG +HV L P++
Sbjct: 446 GGQLHKILIESKRSAEKYATEMLTDNEPILSDMEFGGDGKHVYILTPSK 494
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -3
Query: 337 CRASWCISTDLTSVVMLAGAITTTVPAFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 158
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 157 RAG 149
+ G
Sbjct: 273 KEG 275
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -3
Query: 337 CRASWCISTDLTSVVMLAGAITTTVPAFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 158
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 157 RAG 149
+ G
Sbjct: 273 KEG 275
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 134 QRHPSACSPH*QGSPSSPARRIQNRR 211
QRHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 134 QRHPSACSPH*QGSPSSPARRIQNRR 211
QRHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
>U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical
protein T25G12.6 protein.
Length = 880
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = -3
Query: 322 CISTDLTSVVMLAGAITTTVPAFRIPVSTLPTGTVPIPPILYTSCRGRRRALS---VGRA 152
C S ++++ +G TTV P +++PTG P + TS R
Sbjct: 194 CRSVSDSTLITTSGPSGTTVTVPTTPCASVPTGPTKTPVTVPTSTGSVSRETKSPVTANP 253
Query: 151 GGRMALRASIRHVPSAFPSLRSTNHP 74
G ++ S + V S RST P
Sbjct: 254 GSTVSTSLSSKPVTVVTQSPRSTTTP 279
>AL132876-29|CAF31497.1| 840|Caenorhabditis elegans Hypothetical
protein Y105E8A.7b protein.
Length = 840
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 160 GRAGGRMA--LRASIRHVPSAFPSLRSTNHPLNHG 62
GR G +A +R S+R V RSTNH NHG
Sbjct: 121 GRYCGTVAPHVRISLRRVMKLVLHSRSTNHEDNHG 155
>AL132876-27|CAD21658.1| 906|Caenorhabditis elegans Hypothetical
protein Y105E8A.7a protein.
Length = 906
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 160 GRAGGRMA--LRASIRHVPSAFPSLRSTNHPLNHG 62
GR G +A +R S+R V RSTNH NHG
Sbjct: 121 GRYCGTVAPHVRISLRRVMKLVLHSRSTNHEDNHG 155
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -3
Query: 247 PVSTLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMALRASIRHVPSAFPSLRSTNHPLN 68
P LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 581 PEIPLPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 640
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -3
Query: 247 PVSTLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMALRASIRHVPSAFPSLRSTNHPLN 68
P LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 778 PEIPLPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 837
>AF039047-5|AAY86265.1| 188|Caenorhabditis elegans Hypothetical
protein K11D12.13 protein.
Length = 188
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 45 PTCYLPRAESTEASC 1
P CYLP+A+ T ++C
Sbjct: 20 PKCYLPQAKGTSSNC 34
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/54 (25%), Positives = 19/54 (35%)
Frame = -3
Query: 352 PGTASCRASWCISTDLTSVVMLAGAITTTVPAFRIPVSTLPTGTVPIPPILYTS 191
P T+ W + T+ TTT P +T PT T P T+
Sbjct: 48 PNTSIISPKWVKADCTTTSTTTTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTT 101
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical protein
F12F6.6 protein.
Length = 1126
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 9 PRSIRHEGDNML-EPSTKMPWFKGWLVERKEGKA 107
PR IR ++ E S PW K +LVE K G A
Sbjct: 1073 PRGIRERKTFVVVEKSGLEPWMKKFLVEDKAGPA 1106
>AF043693-2|AAB97535.2| 351|Caenorhabditis elegans Hypothetical
protein C34B2.3 protein.
Length = 351
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 92 TLNQPSLEPWHFGGRLQHV 36
TL PS PW + G L+H+
Sbjct: 206 TLKPPSAHPWKYVGSLRHM 224
>AF039720-6|AAB96700.1| 347|Caenorhabditis elegans Hypothetical
protein F33D11.7 protein.
Length = 347
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 92 TLNQPSLEPWHFGGRLQHV 36
TL PS PW + G L+H+
Sbjct: 205 TLKPPSAHPWKYVGSLRHM 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,219,904
Number of Sequences: 27780
Number of extensions: 159015
Number of successful extensions: 563
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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