Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C06
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   112   2e-26
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   2.8  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   3.7  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    24   6.5  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    24   6.5  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    24   8.6  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    24   8.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  112 bits (269), Expect = 2e-26
 Identities = 49/69 (71%), Positives = 63/69 (91%)
 Frame = +3

Query: 162 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 341
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 342 KQTRAGQRT 368
           KQTRAGQRT
Sbjct: 87  KQTRAGQRT 95


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 165 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 287
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 71  PRRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRPER 178
           PRR   P   +R+W+P     R R R   ++GR +R
Sbjct: 78  PRR---PVEHERNWQPELKHGRERFRERDYEGRRDR 110


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 95  WRQRSWRPTWSWSRTRARPWPWQGR 169
           W++  W   WS SR   R + W  R
Sbjct: 61  WKRDLWSIWWSLSRKATRFYRWLSR 85


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 249 GKCSQACRFCLHGQGDQAW 193
           G CSQ    C   QGD  W
Sbjct: 271 GSCSQYFPLCTISQGDDLW 289


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 162 KEDQKEWVPVTKLGRLVREGK 224
           K+D++E + V+K GRL + GK
Sbjct: 40  KKDREEEIVVSKAGRLHQTGK 60


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 219 GKIDKLESIYLFSLPIKEFEIIDFFLG 299
           G +  + S YLF+LP+  F ++ F  G
Sbjct: 465 GGLISIGSSYLFALPVTVFVVVYFNTG 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,294
Number of Sequences: 5004
Number of extensions: 22038
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)