Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C06
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 98 2e-21
07_01_0756 + 5819367-5820038,5820847-5821005 97 3e-21
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 36 0.008
05_01_0214 - 1615519-1616775 34 0.040
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 32 0.12
03_05_0292 + 22846273-22846377,22847161-22847823 31 0.37
03_02_0261 - 6933962-6934513 31 0.37
09_04_0377 + 17086775-17088310 30 0.49
03_01_0031 + 292335-292844 30 0.49
04_03_0039 - 10024789-10025223 29 1.1
10_07_0161 - 13674631-13675433,13675793-13675862 29 1.5
06_03_0892 - 25713502-25714125,25714309-25715199 28 2.0
11_01_0395 + 2999855-2999920,3000605-3002191 28 2.6
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 3.5
10_02_0115 + 5445580-5445606,5446118-5446609 27 3.5
08_02_0707 - 20212190-20214592 27 3.5
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 3.5
02_04_0551 + 23801464-23801802 27 3.5
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 27 4.6
12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937 27 4.6
07_01_0768 - 5905493-5905740,5905953-5906037 27 4.6
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 6.1
04_04_0845 - 28646547-28646637,28646724-28646854,28647832-286479... 27 6.1
04_04_0534 + 26071227-26071811 26 8.1
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 26 8.1
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 97.9 bits (233), Expect = 2e-21
Identities = 44/69 (63%), Positives = 58/69 (84%)
Frame = +3
Query: 162 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 341
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ L P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE-TLVPGLKDEVMKITPVQ 96
Query: 342 KQTRAGQRT 368
KQTRAGQRT
Sbjct: 97 KQTRAGQRT 105
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 97.5 bits (232), Expect = 3e-21
Identities = 45/69 (65%), Positives = 58/69 (84%)
Frame = +3
Query: 162 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 341
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ L P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE-QLVPGLKDEVMKITPVQ 99
Query: 342 KQTRAGQRT 368
KQTRAGQRT
Sbjct: 100 KQTRAGQRT 108
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 36.3 bits (80), Expect = 0.008
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 62 WRFP-RRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRP 172
W F RR WIPW +R+ + WS S T R W Q RP
Sbjct: 184 WSFEWRRGWIPWEARRASKSAWSQSSTGTRKW-MQYRP 220
>05_01_0214 - 1615519-1616775
Length = 418
Score = 33.9 bits (74), Expect = 0.040
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 159 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVH 55
HGHG DHDH G D HH G+ H H
Sbjct: 190 HGHGHGHSHDHDH-GGSDHDHHHHEDQEHGHVHHH 223
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 32.3 bits (70), Expect = 0.12
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 56 WTWRFPRRLWIPWWRQRSWRP 118
W WR P RL W R RSW P
Sbjct: 140 WLWRRPSRLLSKWRRGRSWAP 160
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 30.7 bits (66), Expect = 0.37
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 98 RQRSWRPTWSWSRTRAR 148
R+RSWR WSW R R R
Sbjct: 157 RRRSWRRQWSWRRRRRR 173
>03_02_0261 - 6933962-6934513
Length = 183
Score = 30.7 bits (66), Expect = 0.37
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 98 RQRSWRPTWSWSRTRAR 148
R+RSWR WSW R R R
Sbjct: 116 RRRSWRRQWSWRRRRRR 132
>09_04_0377 + 17086775-17088310
Length = 511
Score = 30.3 bits (65), Expect = 0.49
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 62 WRFPRRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRPERVGASHQAWS 205
+R RR W P+ R R W+R R P P +G GA AWS
Sbjct: 62 YRDRRRQWSPYHRDRGRDVEREWARDRDHPAPRRGGG---GAGAGAWS 106
>03_01_0031 + 292335-292844
Length = 169
Score = 30.3 bits (65), Expect = 0.49
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 83 WIPWWRQRSWRPTWSWSR 136
W W R+R WR W W R
Sbjct: 39 WRRWRRRRGWRRRWGWQR 56
>04_03_0039 - 10024789-10025223
Length = 144
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 117 GRHDLCRHHGIQSRRGNRHVHRLELRPPLLNDQCSR 10
GR DL R H + R + V R+ RP QC R
Sbjct: 99 GRGDLVRRHDAKEARRDGEVERVARRPDAEEAQCGR 134
>10_07_0161 - 13674631-13675433,13675793-13675862
Length = 290
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +2
Query: 59 TWRFPRRLWI---PWWRQR-SWRPTWSWSRTRARPWPWQGRPERVGASHQAWS 205
+WR P W+ PW Q+ +WRP S W G P G SH W+
Sbjct: 229 SWR-PAGPWVCFNPWPAQQLAWRPPPPPSPLSWSSWAGSGGPLFPGTSHLRWA 280
>06_03_0892 - 25713502-25714125,25714309-25715199
Length = 504
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 189 LAPTLSGLPCHGHGRARVRDHDHVGRHDLCRHHG 88
L P+ GLP GH V HV DL R HG
Sbjct: 35 LPPSPWGLPVIGHLHHLVGALPHVAMRDLARRHG 68
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 249 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 368
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 165 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 299
+ KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
>10_02_0115 + 5445580-5445606,5446118-5446609
Length = 172
Score = 27.5 bits (58), Expect = 3.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 83 WIPWWRQRSWRPTWS 127
W+ W R+R WR WS
Sbjct: 27 WVAWRRRRRWRIRWS 41
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = -1
Query: 162 CHGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLELRPPLL 28
CHGH DH H HD HH ++ + + P +L
Sbjct: 580 CHGH------DHHHHHHHDHSEHHQQSGDHAHQDISNISSDPAIL 618
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 96 HHGIQSRRGNRHVHRLELRPP 34
HH RRG+RH +LRPP
Sbjct: 5 HHHHHPRRGSRHAAAGDLRPP 25
>02_04_0551 + 23801464-23801802
Length = 112
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 92 WWRQRSWRPTWSWSRTRARPWPWQGRPERVGASHQAWSPC 211
W R RS R W R R P PW+ R + W+ C
Sbjct: 30 WSRSRSRR---HWRRRR-EPRPWRRRQRGAAGGGRTWTTC 65
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 27.1 bits (57), Expect = 4.6
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -1
Query: 189 LAPTLSGLPCHGHG---RARVRDHDHVGR-HDLCRHH 91
+AP L L C G G R RVR +VGR H L RHH
Sbjct: 76 VAPCLLTLQCSGVGWGVRKRVR---YVGRHHHLARHH 109
>12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937
Length = 418
Score = 27.1 bits (57), Expect = 4.6
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -1
Query: 189 LAPTLSGLPCHGHG---RARVRDHDHVGR-HDLCRHH 91
+AP L L C G G R RVR +VGR H L RHH
Sbjct: 67 VAPCLLTLQCSGVGWGVRKRVR---YVGRHHHLARHH 100
>07_01_0768 - 5905493-5905740,5905953-5906037
Length = 110
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = +2
Query: 119 TWSW-----SRTR-ARPWPWQGRPERVGASHQAWSPC 211
TW+W R R A P PW+ R E G H + C
Sbjct: 2 TWTWRLLLAERPRMAPPHPWEPRAEAAGVRHVRGTSC 38
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -1
Query: 159 HGHGRARVRDHDHVGRHDLCRHH 91
HGH H H G H RHH
Sbjct: 546 HGHSHGDHHHHYHGGHHQRRRHH 568
>04_04_0845 -
28646547-28646637,28646724-28646854,28647832-28647938,
28648043-28648121,28648578-28648667,28648814-28649065,
28649367-28649519,28649631-28649955,28650069-28650283
Length = 480
Score = 26.6 bits (56), Expect = 6.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 PWPWQGRPERVGAS 190
PW WQG+PE G +
Sbjct: 403 PWRWQGKPEITGGT 416
>04_04_0534 + 26071227-26071811
Length = 194
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 74 RRLWIPWWRQRSWRPTWSWSRTRARP--WPWQGRPERVGASH 193
RR W R +WR +W RT ++P +P G P G H
Sbjct: 104 RRRDCAWRRPAAWRWLTTWRRTASKPDGYP-SGMPVPDGHEH 144
>04_03_0517 +
16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 213 REGKIDKLESIYLFSLPIKEF 275
REGKI +LES+ +LP +EF
Sbjct: 717 REGKIARLESLMDGTLPTEEF 737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,169,067
Number of Sequences: 37544
Number of extensions: 181970
Number of successful extensions: 652
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -