Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C06
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    95   1e-20
Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    27   4.2  
AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    26   9.7  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 50/68 (73%), Positives = 53/68 (77%)
 Frame = +3

Query: 165 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 344
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID-ALCSNLKDEVLKISPVQK 110

Query: 345 QTRAGQRT 368
           QT AGQRT
Sbjct: 111 QTTAGQRT 118


>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -1

Query: 159 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLE 46
           HGH      DH H   HD   HHG  S   + H H  E
Sbjct: 99  HGHSHDEEEDHHHGHAHD---HHG-HSHEDHGHSHGAE 132



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -1

Query: 159 HGHGRARVRDHDHVGRHDLCR-HHGIQSRRGNRHVH 55
           H HG A   DH H   H     HHG        H H
Sbjct: 76  HDHGHAHDHDHGHAHDHGHAHDHHGHSHDEEEDHHH 111


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -1

Query: 159 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVH 55
           HGH       H H G H     HHG     G  H H
Sbjct: 516 HGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGH 551



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -1

Query: 159 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRH 61
           H HG   V  H H G H    HHG     G  H
Sbjct: 646 HHHGSHGVH-HGHHGTHHSLAHHGHHGGHGTHH 677



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 159 HGHGRARVRDHDHVGRHDLCRHHG 88
           HGHG      H H G H +  HHG
Sbjct: 593 HGHGHHAPAHHGHHGEHGV--HHG 614



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -1

Query: 159 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVH 55
           HGHG      H H G H     HHG      +   H
Sbjct: 445 HGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAH 480


>Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical
           protein R13H4.7 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 56  WTWRFPRRLWIPWWRQRSWRPTWSWSRTRARPWP 157
           W W     L   WW         +WSR  A  WP
Sbjct: 76  WRWNIHIYLDFTWWAMVYHYTVIAWSRLAAVQWP 109


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 322 RTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSLVTGT 182
           R+SS+    P   S +S  +  R       + S+ PSRTR P+L + T
Sbjct: 538 RSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTLQSNT 585


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 322 RTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSLVTGT 182
           R+SS+    P   S +S  +  R       + S+ PSRTR P+L + T
Sbjct: 538 RSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTLQSNT 585


>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 75  RGNRHVHRLELRPPLLNDQCSRT 7
           R  +HVH+     PL+NDQ  RT
Sbjct: 221 RFKQHVHQSAAPTPLMNDQVIRT 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,214,002
Number of Sequences: 27780
Number of extensions: 129231
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)