Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C05
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   216   4e-57
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    28   1.9  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   2.5  
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    27   3.4  
Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical p...    26   7.8  
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  216 bits (528), Expect = 4e-57
 Identities = 96/116 (82%), Positives = 102/116 (87%)
 Frame = +1

Query: 31  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLAKKRATVDDFPLCVHLVSDEYEQL 210
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDL  KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 211 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 378
           SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMR
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMR 116


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +2

Query: 218 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 313
           RRWK+ V +AT+TS      R+ V+ +STS    TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 91  RFCRGVPDPKIRIFDLAKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 237
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 109 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 14
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical
           protein C09H6.2a protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 109 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 14
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 840 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 869


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 109 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 14
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical
           protein C47A10.1 protein.
          Length = 1294

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 109 PDPKIRIFDLAKKRATVDDFPLCVHLV 189
           P PKI IF L +  +TVD   L V ++
Sbjct: 25  PPPKISIFQLYRYTSTVDRLMLAVGII 51


>Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical
           protein C47A10.1 protein.
          Length = 1294

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 109 PDPKIRIFDLAKKRATVDDFPLCVHLV 189
           P PKI IF L +  +TVD   L V ++
Sbjct: 25  PPPKISIFQLYRYTSTVDRLMLAVGII 51


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 316 HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQN 212
           HG G      GT   R  +  +CCN +G L  P N
Sbjct: 183 HGIGAFGGNKGTGYGR--VPSSCCNEHGKLSYPNN 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,520,527
Number of Sequences: 27780
Number of extensions: 192132
Number of successful extensions: 520
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)