Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C05
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   1.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.4  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 232 LLPAPQNSAARTHQTLSARIVGSHPLSLSFWPSRKYGSLG 113
           L+  P  + +  H  + A  V  + LSLS  P   +GS G
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLFGWGSYG 41


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 104 VCLTQRSVFSTWPKRERQWMTSH 172
           +CLT+R +   +  R  +W   H
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEH 67


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 4   RWCRFVENTMGRRPAR 51
           RW +F+E +  R+P +
Sbjct: 245 RWYKFIEGSSRRQPVQ 260


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 12 SLCGEHNGAPTSEMLS 59
          SLCG H     +E+LS
Sbjct: 49 SLCGRHEKRLLNELLS 64


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 12 SLCGEHNGAPTSEMLS 59
          SLCG H     +E+LS
Sbjct: 49 SLCGRHEKRLLNELLS 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,840
Number of Sequences: 438
Number of extensions: 2641
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)