Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C02
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   4.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   5.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   5.4  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 8   ADLKGDTSGHFKRLC 52
           A +K D   HF+ LC
Sbjct: 162 AQMKADLRSHFRALC 176


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +3

Query: 45  GCACLCAWRIATRIKAWTRALQGLTLKRW 131
           G  C   WR    +  +  A+QG  ++ W
Sbjct: 375 GYVCEHRWRQIFNMVGFRNAVQGTGIENW 403


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +3

Query: 45  GCACLCAWRIATRIKAWTRALQGLTLKRW 131
           G  C   WR    +  +  A+QG  ++ W
Sbjct: 376 GYGCEHRWRQIFNMVGFRNAVQGTGIENW 404


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,937
Number of Sequences: 336
Number of extensions: 1418
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)