Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_C02
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   1.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   4.1  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   4.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   5.4  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   5.4  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   7.1  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    24   9.4  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    24   9.4  

>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +2

Query: 149 QWGTDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIK 271
           QWGTD ++  ++  TR+ +Q++  F + E  +   + +++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 320  CVKSKVGFFAERLYYSMKGLGTND-KTLIRIVVRRSEIDLGDIK 448
            CV S++ FF E L+    GL ++  KT I  ++   E+ L D K
Sbjct: 1309 CVLSELNFFLELLHSLNNGLPSDSHKTSIVCILYLLEVLLADSK 1352


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 442 VSEVDFRASDDDSDKGLIICAQTFHGVVESLSE 344
           V+ ++ R +DD +DK L + + T   +VE++ E
Sbjct: 892 VTSIEDRTADDSTDKWLRLPSGTIWHLVEAIDE 924


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 222  SLNSRLSVGKILRNPSRKNS 281
            SL+S L  G + R PSR+NS
Sbjct: 1338 SLSSMLKGGSVSRTPSRQNS 1357


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 158 TDESVFNSILITRSYQQLRQIFAEFEALSG---KDIEESIKKEFSGSVEKGMLAIVK 319
           T+ S+ NS L  +       +  +F+A      KD+EES+ ++ + ++EK +   +K
Sbjct: 354 TNFSIINSGLYLKKDAAKNLLAKQFDATYSYYHKDLEESVHQKLNSNLEKRVEKYIK 410


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 307 KHAFLDTSREFFLDGFLNI 251
           KH+FLD SR+   +GFLN+
Sbjct: 164 KHSFLDNSRD---EGFLNL 179


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 406 SDKGLIICAQTFHGVVESLSEETDLALNA 320
           S  G+I C Q    V +S+SE   L LN+
Sbjct: 69  SQNGIIGCTQPRRLVAKSVSERVSLELNS 97


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 433 VDFRASDDDSDKGLIICAQTFHGVVESLSEETD 335
           V+   S  D +   I+C++    V+ES S+E+D
Sbjct: 484 VEDACSVADENSAPILCSKFLFPVIESFSKESD 516


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 199 RAGDKDGIEHGFV 161
           RAG+KDGI++ FV
Sbjct: 58  RAGEKDGIDYHFV 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,392
Number of Sequences: 5004
Number of extensions: 27378
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)