Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C02
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 90 7e-19
08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107 66 9e-12
07_03_1563 - 27746977-27747180,27747280-27747369,27747529-277477... 61 5e-10
09_04_0360 - 16944990-16945202,16945288-16945377,16945525-169457... 58 2e-09
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 57 6e-09
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 49 2e-06
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 47 8e-06
01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023... 41 4e-04
05_04_0138 - 18350298-18350579,18350648-18350878,18350977-183512... 31 0.57
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 28 3.0
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 27 7.0
03_06_0461 - 34107506-34107845,34107993-34108151,34108564-341087... 27 7.0
11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122 27 9.2
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189 27 9.2
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 27 9.2
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 90.2 bits (214), Expect = 7e-19
Identities = 49/148 (33%), Positives = 78/148 (52%)
Frame = +2
Query: 5 EADLKGDTSGHFKRLCVSLCMANRDENQGVDXXXXXXXXXXXXXXXXXQWGTDESVFNSI 184
E D+ TSG ++L ++ R E VD + GTDE F I
Sbjct: 121 EHDIGQRTSGDHQKLLLAYVGIPRYEGPEVDPTIVTHDAKDLYKAGEKRLGTDEKTFIRI 180
Query: 185 LITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIVKCVKSKVGFFAERLYY 364
RS+ + + + + + + +E+ +K E SG+ E +L I++C ++ +FA+ L
Sbjct: 181 FTERSWAHMASVASAYHHMYDRSLEKVVKSETSGNFELALLTILRCAENPAKYFAKVLRK 240
Query: 365 SMKGLGTNDKTLIRIVVRRSEIDLGDIK 448
SMKG+GT+D TLIR+VV R+EID+ IK
Sbjct: 241 SMKGMGTDDSTLIRVVVTRTEIDMQYIK 268
Score = 34.3 bits (75), Expect = 0.046
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 155 GTDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIV 316
GTD+S +++TR+ ++ I AE+ K + E+I E SG+ +L++V
Sbjct: 246 GTDDSTLIRVVVTRTEIDMQYIKAEYYKKYKKSLAEAIHSETSGNYRTFLLSLV 299
>08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107
Length = 346
Score = 66.5 bits (155), Expect = 9e-12
Identities = 30/62 (48%), Positives = 45/62 (72%)
Frame = +2
Query: 263 SIKKEFSGSVEKGMLAIVKCVKSKVGFFAERLYYSMKGLGTNDKTLIRIVVRRSEIDLGD 442
++K E SG+ G+L I++C +S +FA+ L+ +MKGLGTND TLIR+V R+E+D+
Sbjct: 250 AVKSETSGNFGFGLLTILRCAESPAKYFAKVLHEAMKGLGTNDTTLIRVVTTRAEVDMQY 309
Query: 443 IK 448
IK
Sbjct: 310 IK 311
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/54 (20%), Positives = 30/54 (55%)
Frame = +2
Query: 155 GTDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIV 316
GT+++ ++ TR+ ++ I AE+ + + +++ E SG+ +L+++
Sbjct: 289 GTNDTTLIRVVTTRAEVDMQYIKAEYHRSYKRSLADAVHSETSGNYRTFLLSLI 342
>07_03_1563 -
27746977-27747180,27747280-27747369,27747529-27747753,
27748002-27748115,27748218-27748423,27748757-27748832
Length = 304
Score = 60.9 bits (141), Expect = 5e-10
Identities = 37/98 (37%), Positives = 51/98 (52%)
Frame = +2
Query: 155 GTDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIVKCVKSK 334
G DE V I+ TRS QLR F + G DI E I G + + V C+ S
Sbjct: 174 GEDEVV--RIVTTRSKSQLRATFQRYREDHGSDIAEDIDSHCIGQFGRMLKTAVWCLTSP 231
Query: 335 VGFFAERLYYSMKGLGTNDKTLIRIVVRRSEIDLGDIK 448
FAE + +S+ GLGT + L R++V R+EID+ I+
Sbjct: 232 EKHFAEVIRHSILGLGTYEDMLTRVIVSRAEIDMRHIR 269
>09_04_0360 -
16944990-16945202,16945288-16945377,16945525-16945746,
16945854-16946081,16946163-16946372
Length = 320
Score = 58.4 bits (135), Expect = 2e-09
Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Frame = +2
Query: 5 EADLKGDTSGHFKR-LCVSLCMANRDENQGVDXXXXXXXXXXXXXXXXXQWGT-DESVFN 178
E D+ + S ++R L V+L +++ + + G+ DE+V
Sbjct: 133 EQDMVTEPSHPYQRQLLVALATSHKSHHDELSRHIAKCDARRLYDAKNSGMGSVDEAVIL 192
Query: 179 SILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIVKCVKSKVGFFAERL 358
+ RS QLR F ++ + G D +++KK G E+ + +VKC+ + +F++ L
Sbjct: 193 EMFSKRSIPQLRLAFCSYKHIYGHDYTKALKKNGFGEFEQSLRVVVKCIYNPSMYFSKLL 252
Query: 359 YYSMKGLGTNDKTLIRIVVRRSEIDLGDIK 448
+ S++ TN + + R ++ ++D+ IK
Sbjct: 253 HRSLQCSATNKRLVTRAILGSDDVDMDKIK 282
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 57.2 bits (132), Expect = 6e-09
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Frame = +2
Query: 5 EADLKGDTSGHFKRLCVSLCMANRDENQGVDXXXXXXXXXXXXXXXXXQ-WGTDESVFNS 181
E D+ +G F++L V L A R E V+ + +G DE +
Sbjct: 136 EEDVAAHATGDFRKLLVPLISAYRYEGPEVNTKLAHSEAKILHEKIQHKAYGDDEII--R 193
Query: 182 ILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIVKCVKSKVGFFAERLY 361
IL TRS QL F + G I + +K + + AI++C +F + +
Sbjct: 194 ILTTRSKAQLIATFNRYNDEYGHPINKDLKADPKDEFLSTLRAIIRCFCCPDRYFEKVIR 253
Query: 362 YSMKGLGTNDKTLIRIVVRRSEIDL 436
++ G+GT++ +L RI+ R+E+DL
Sbjct: 254 LAIAGMGTDENSLTRIITTRAEVDL 278
Score = 35.9 bits (79), Expect = 0.015
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 152 WGTDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGML 307
WGT+E++ SIL R Q R I + G+++ SI E SG E+ ++
Sbjct: 27 WGTNEALIISILAHRDAAQRRAIRRAYADTYGEELLRSITDEISGDFERAVI 78
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 48.8 bits (111), Expect = 2e-06
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +2
Query: 158 TDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIVKCVKSKV 337
+D+ + IL TRS QL F + G I + +K + + AI++C
Sbjct: 112 SDDEIIR-ILTTRSKAQLLATFNSYNDQFGHPITKDLKADPKDEFLGTLRAIIRCFTCPD 170
Query: 338 GFFAERLYYSMKGLGTNDKTLIRIVVRRSEIDLGDIK 448
+F + + ++ G+GT++ +L RI+ R+E+DL IK
Sbjct: 171 RYFEKVIRLALGGMGTDENSLTRIITTRAEVDLKLIK 207
Score = 30.3 bits (65), Expect = 0.75
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 152 WGTDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVE 295
WGT+E + SIL R Q R I + G+++ ++ E G E
Sbjct: 27 WGTNEKLIISILAHRDAAQRRAIRRAYAEAYGEELLRALNDEIHGKFE 74
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 46.8 bits (106), Expect = 8e-06
Identities = 28/89 (31%), Positives = 46/89 (51%)
Frame = +2
Query: 182 ILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIVKCVKSKVGFFAERLY 361
I+ TRS QL + GK I+E + + + A + C+ S FAE +
Sbjct: 246 IVGTRSKAQLAVTLERYRQEHGKGIDEVLDGRRGDQLAAVLKAALWCLTSPEKHFAEVIR 305
Query: 362 YSMKGLGTNDKTLIRIVVRRSEIDLGDIK 448
S+ GLGT+++ L R +V R+E+D+ +K
Sbjct: 306 TSILGLGTDEEMLTRGIVSRAEVDMEKVK 334
Score = 31.9 bits (69), Expect = 0.24
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 152 WGTDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGML 307
WGTDE+ IL R+ Q +I +E L + + + + E SG ++
Sbjct: 73 WGTDENALIEILGHRTAAQRAEIAVAYEGLYDETLLDRLHSELSGDFRSALM 124
>01_05_0009 -
17101633-17101836,17101948-17102040,17102122-17102334,
17102514-17102651,17102764-17102909,17106264-17106339
Length = 289
Score = 41.1 bits (92), Expect = 4e-04
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +2
Query: 158 TDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGS-VEKGMLAIVKCVKSK 334
TD I+ TRS QL F+ F G I ++++ + + ++C+
Sbjct: 157 TDHGELIRIVGTRSRAQLNATFSWFRDERGTSITKALQHGADPTGYSHALRTALRCISDA 216
Query: 335 VGFFAERLYYSMKGLGTNDKTLIRIVVRRSEIDLGDIK 448
+F + L +M GTN+ +L R++V +E DL IK
Sbjct: 217 NKYFVKVLRNAMHKSGTNEDSLTRVIVLHAEKDLKGIK 254
Score = 35.9 bits (79), Expect = 0.015
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 152 WGTDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGM 304
WGTDE +L R Q +QI +E +++ + ++ E SG +E+ M
Sbjct: 27 WGTDEQAVIGVLAHRDATQRKQIRLTYEENYNENLIQRLQSELSGDLERAM 77
>05_04_0138 -
18350298-18350579,18350648-18350878,18350977-18351253,
18351307-18351487,18351612-18351651
Length = 336
Score = 30.7 bits (66), Expect = 0.57
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +2
Query: 182 ILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIVKCVKSKVGFFAERLY 361
IL TRS L + F ++ + G+ IEE + E+ + C+ + +F+E +
Sbjct: 217 ILTTRSKPHLVETFKHYKEIHGRHIEEDL------GHEETLREAALCLATPARYFSEVVA 270
Query: 362 YSMK-GLGTNDK-TLIRIVVRRSEIDLGDIK 448
++ G + K L R+ V R+++D+ I+
Sbjct: 271 AAVSDGADHHAKEALTRVAVTRADVDMDAIR 301
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 145 RPMGNRRIRVQFHPYHPLLSAVKTNFR*IRGSQWE 249
RP ++ +++Q HP HP L N R + WE
Sbjct: 8 RPTSDKVVKIQLHPTHPWLVTADANDR-VSVWDWE 41
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 283 WKCRERHACYCEMR*EQGRFLR*ATLLLHERFG 381
W+ + C C M Q RFLR ++ H R G
Sbjct: 309 WRRKAHSMCVCTMLRNQARFLR-EWIIYHSRIG 340
>03_06_0461 -
34107506-34107845,34107993-34108151,34108564-34108763,
34109042-34109213,34111127-34111350,34111438-34111644
Length = 433
Score = 27.1 bits (57), Expect = 7.0
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +2
Query: 155 GTDESVFNSILITRSYQQLRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIVKCVKSK 334
G D VFNS L + Q+++ + FE S KDI E +E G V + A+V+ V++
Sbjct: 247 GADILVFNSYLWWMTGQKMKILQGSFEDKS-KDIVEMETEEAYGMV---LNAVVRWVENN 302
Query: 335 VGFFAERLYY 364
+ R+++
Sbjct: 303 MNPRNSRVFF 312
>11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122
Length = 590
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = -2
Query: 190 DKDGIEHGFVGSPLAFTGSGQRFSVSPCSALVHALILVAIRHAQRH 53
D+ ++ F +PL+ T +G+ +S CS +V ++ ++H + +
Sbjct: 179 DRRMMDGNFDDNPLSATINGKLGDLSNCSRMVEESFILDVKHGESY 224
>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
Length = 470
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 346 EETDLALNAFHNSKHAFLDTSRE 278
EE + A+N H+ A+LDT +E
Sbjct: 288 EEKNAAINQLHDELQAYLDTKKE 310
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 209 LRQIFAEFEALSGKDIEESIKKEFSGSVEKGMLAIVKCVKSKVGFFAERLYYSMK 373
L+ ++ F + + I I + + E +LAI++CV+S +G L++SM+
Sbjct: 1532 LKMLYPLFSESTLRSIFVDIIESLENAGENSVLAILRCVRSVLGL----LHFSMR 1582
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,580,156
Number of Sequences: 37544
Number of extensions: 183908
Number of successful extensions: 510
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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