Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C01
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 138 4e-34
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 49 3e-07
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 3.2
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 5.6
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 5.6
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 5.6
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 7.3
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 24 9.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 24 9.7
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 24 9.7
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 138 bits (334), Expect = 4e-34
Identities = 63/123 (51%), Positives = 87/123 (70%)
Frame = +2
Query: 92 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 271
K+ YF K+ L ++Y F+V DNV SQQM +R LRG + ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 272 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 451
P LE+LLP ++GNVGFVFT DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 452 LGP 460
+ P
Sbjct: 128 MEP 130
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 49.2 bits (112), Expect = 3e-07
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Frame = +2
Query: 62 KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 241
K G E KA F + Q LD + +I N+ + +++IR +G S + MGK
Sbjct: 17 KKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTK 71
Query: 242 MMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAI 412
+M KA+ E A + KL + G VG +FT +V E+ VQ AR GA+
Sbjct: 72 VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAV 130
Query: 413 APLSVVIPA 439
AP + VIPA
Sbjct: 131 APFTHVIPA 139
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 3.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 44 PYFTQSKMGREDKATWKSNY 103
PYF Q+ M D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 218 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 352
I L+G N ++ DH++ +P ++ P+I V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 212 HSIVLMGKNTMMRKAIKDHLE 274
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 238 HHDEESHQGPS*NKSSSRKTASSHQG 315
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 459 GPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 334
G PV + + G++ P AGAW L N L T ++
Sbjct: 139 GGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 163 VRTHYET-FWVFVQQLDDFNEVIGLPGSLVLP 71
V H ET +++VQ + N+ + + GSL P
Sbjct: 477 VAMHVETTLYIYVQSFQNANQTVSICGSLPEP 508
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 235 KHHDEESHQGPS*NKSSSRKTASSHQG 315
KHH+ E H+GP ++ K H+G
Sbjct: 343 KHHELEEHEGPEHHRGPEDK--EHHKG 367
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 9.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +1
Query: 319 CWLCLHPW 342
CW+CL PW
Sbjct: 317 CWVCLGPW 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,098
Number of Sequences: 5004
Number of extensions: 45355
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -