Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C01
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 138 3e-33
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 137 3e-33
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 137 3e-33
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.45
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 29 1.8
02_04_0427 - 22809481-22810335 28 3.1
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 3.1
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 28 4.2
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 28 4.2
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 5.5
03_04_0243 + 19298293-19299117 27 5.5
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 7.3
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 27 7.3
07_03_0662 + 20431448-20432767 27 7.3
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 7.3
04_01_0404 - 5297341-5297970,5298304-5299179 27 7.3
01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598 27 7.3
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 27 9.6
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 27 9.6
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 9.6
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 27 9.6
06_01_1085 - 8886868-8887556,8887629-8888574 27 9.6
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 27 9.6
03_05_0907 + 28678909-28679253 27 9.6
02_01_0152 - 1070249-1070296,1070443-1070515,1070601-1070671,107... 27 9.6
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 138 bits (333), Expect = 3e-33
Identities = 70/132 (53%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Frame = +2
Query: 71 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 250
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 251 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 425 VVIPAHNTGLGP 460
VV+P NTGL P
Sbjct: 124 VVVPPGNTGLDP 135
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 137 bits (332), Expect = 3e-33
Identities = 70/132 (53%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Frame = +2
Query: 71 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 250
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 251 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 425 VVIPAHNTGLGP 460
VV+P NTGL P
Sbjct: 124 VVVPPGNTGLDP 135
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 137 bits (332), Expect = 3e-33
Identities = 70/132 (53%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Frame = +2
Query: 71 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 250
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 251 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 425 VVIPAHNTGLGP 460
VV+P NTGL P
Sbjct: 124 VVVPPGNTGLDP 135
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.1 bits (67), Expect = 0.45
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +2
Query: 281 PALEK-LLPHIKGN---VGFVFTRGDLVDV--RDKLLENKVQAPARPGAIAPLSVVIPA 439
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -1
Query: 415 SNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 308
+NG+R G + L+Q++T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
>02_04_0427 - 22809481-22810335
Length = 284
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 283 WICFKMVLDGFPHHGVFAHEHNAVTTQ*N 197
W F+ + FP GVF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 310 DVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NT 194
D Q+FE+W C ++ GF G F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 284 ALEKL-LPH--IKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
AL+KL LPH ++GN+GF+ + + + D +L++ A P + LS
Sbjct: 401 ALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLS 450
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 17 CLVLKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPK 142
CL L+FL T + R K T K + II++L+ YP+
Sbjct: 812 CLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 92 KSNYFVKIIQLLDEYPKCF 148
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_04_0243 + 19298293-19299117
Length = 274
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 432 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPTFP 313
+ TD+ + APG A A + S SRTS +P + PT P
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSP 209
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 134 YPKCFI--VGADNVGSQQMQQIRISL 205
Y KC I VG DN+ Q MQQ R SL
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSL 1317
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 137 PKCFIVGADNVGSQQ-MQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIK 313
P +V ++ G+ Q +Q + L G +++ R ++ LE NP L+ + K
Sbjct: 248 PAMSLVRSETTGTVQGVQTSKHILYGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVMPRK 307
Query: 314 GNVGFVFTRGDLVDVRDKLLE 376
G++ V + D + + L+E
Sbjct: 308 GHL-LVLDKFDKLKLNHGLME 327
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 197 YGSVASVASLHCPHPL 150
YG +AS SL CP PL
Sbjct: 417 YGGLASAGSLQCPRPL 432
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 149 IVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLL 301
++G +NV M RI+ R H+++ +G + +K+ + PA+E+ +
Sbjct: 559 VLGEENVNVSFMSVGRIAPRKHAVMAIGVDEEPKKSTLTKIGEIPAIEEFV 609
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 224 LMGKNTMMRKAIKDHLETNPALEKLLPHI 310
L+ + M+ IK+ L NP L LLPH+
Sbjct: 342 LLENLSYMKLVIKETLRLNPVLPLLLPHL 370
>01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598
Length = 94
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 193 PYFIAWSQHCAHGQKHHDEESHQG 264
P+ S+ C H Q H+ EE+H G
Sbjct: 13 PHHCVCSELCMHTQIHYTEETHTG 36
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 323 GFVFTRGDLVDVRDKLLENKVQAPARP 403
GF TR LVD++ +++ +K+ PA P
Sbjct: 192 GFELTRVTLVDIKGEVVLDKLVKPANP 218
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 293 KLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP 394
KLLP VGFV RG V +K+++ P
Sbjct: 464 KLLPLDANKVGFVNVRGPHVQAPEKIMDGDYTGP 497
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 223 AHGQKHHDEESHQGPS*NKSSSRKTASSHQGKC 321
A ++ + G S N +SS KTA S Q KC
Sbjct: 740 AEQEQPEENAEASGESGNTNSSHKTAHSSQNKC 772
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 173 SLHCPHPL*NILGIRPTVG 117
S+ CP L +++GI+PTVG
Sbjct: 177 SILCPSSLNSVVGIKPTVG 195
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 227 MGKNTMMRKAIKDHLETNPALEKLLP 304
+GK T++R A+K+ + +P L L+P
Sbjct: 378 LGKMTLLRAAMKEAMRLHPPLPLLIP 403
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 173 SLHCPHPL*NILGIRPTVG 117
S+ CP L +++GI+PTVG
Sbjct: 176 SILCPSSLNSVVGIKPTVG 194
>03_05_0907 + 28678909-28679253
Length = 114
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 453 RPVL*AGMTTDNGAMAPGRAGA 388
RP+L NGA APG AGA
Sbjct: 53 RPLLHGSAAAANGASAPGNAGA 74
>02_01_0152 -
1070249-1070296,1070443-1070515,1070601-1070671,
1070768-1070874,1071836-1072007
Length = 156
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 233 KNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLE 376
K T RK HL+ N AL K+ V +G L+++ D+L++
Sbjct: 86 KVTGKRKRNAQHLQENSALCKVCTSSNSFVVRCCVKGSLLEINDRLIK 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,489
Number of Sequences: 37544
Number of extensions: 313187
Number of successful extensions: 840
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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