Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_C01
(460 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic ri... 226 3e-59
BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein. 226 3e-59
BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, larg... 226 3e-59
AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0 va... 226 3e-59
AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein. 226 3e-59
AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0 va... 225 8e-59
AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein. 223 3e-58
BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein. 217 1e-56
U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein. 30 3.3
U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein. 30 3.3
U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3 pro... 30 3.3
BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3 p... 30 3.3
AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3 p... 30 3.3
AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3 p... 30 3.3
AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3 p... 30 3.3
AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C ... 30 3.3
EF567077-1|ABQ63084.1| 1328|Homo sapiens Fanconi anemia compleme... 29 5.8
EF469766-1|ABP88002.1| 1328|Homo sapiens Fanconi anemia compleme... 29 5.8
AK027564-1|BAB55200.1| 906|Homo sapiens protein ( Homo sapiens ... 29 5.8
AK001581-1|BAA91770.1| 1084|Homo sapiens protein ( Homo sapiens ... 29 5.8
AB058697-1|BAB47423.1| 802|Homo sapiens KIAA1794 protein protein. 29 5.8
AK124794-1|BAC85951.1| 244|Homo sapiens protein ( Homo sapiens ... 29 7.7
>M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P0 mRNA, complete cds. ).
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein.
Length = 255
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein.
Length = 317
Score = 226 bits (552), Expect = 3e-59
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 225 bits (549), Expect = 8e-59
Identities = 103/132 (78%), Positives = 117/132 (88%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMG+NTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGRNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein.
Length = 317
Score = 223 bits (544), Expect = 3e-58
Identities = 104/132 (78%), Positives = 115/132 (87%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG +VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLPHI GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 121 VTVPAQNTGLGP 132
>BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein.
Length = 254
Score = 217 bits (531), Expect = 1e-56
Identities = 102/132 (77%), Positives = 116/132 (87%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 244
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 245 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 424
MRKAI+ HLE NPALEKLLP ++GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLP-LRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 119
Query: 425 VVIPAHNTGLGP 460
V +PA NTGLGP
Sbjct: 120 VTVPAQNTGLGP 131
>U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 77 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 214
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein.
Length = 429
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 77 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 214
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 229 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 277
>U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 77 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 214
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 77 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 214
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 77 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 214
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3
protein.
Length = 259
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 77 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 214
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 134 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 182
>AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 77 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 214
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C
protein.
Length = 371
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 77 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 214
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 171 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 219
>EF567077-1|ABQ63084.1| 1328|Homo sapiens Fanconi anemia
complementation group I protein.
Length = 1328
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 252 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 371
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 636 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 674
>EF469766-1|ABP88002.1| 1328|Homo sapiens Fanconi anemia
complementation group I isoform 3 protein.
Length = 1328
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 252 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 371
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 636 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 674
>AK027564-1|BAB55200.1| 906|Homo sapiens protein ( Homo sapiens
cDNA FLJ14658 fis, clone NT2RP2002549. ).
Length = 906
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 252 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 371
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 274 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 312
>AK001581-1|BAA91770.1| 1084|Homo sapiens protein ( Homo sapiens
cDNA FLJ10719 fis, clone NT2RP3001109. ).
Length = 1084
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 252 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 371
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 457 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 495
>AB058697-1|BAB47423.1| 802|Homo sapiens KIAA1794 protein protein.
Length = 802
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 252 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 371
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 110 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 148
>AK124794-1|BAC85951.1| 244|Homo sapiens protein ( Homo sapiens
cDNA FLJ42804 fis, clone BRCAN2002856, highly similar
to AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY A
MEMBER 2. ).
Length = 244
Score = 29.1 bits (62), Expect = 7.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +2
Query: 209 GHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQ 388
G+ +VLM + M R A +D +ET P ++ K + VF D+ KV
Sbjct: 156 GNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYK-MICHVFESEDVSKPLPGHSPPKVH 214
Query: 389 APAR---PGAI 412
+P R PGA+
Sbjct: 215 SPGRLQDPGAV 225
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,304,344
Number of Sequences: 237096
Number of extensions: 1806679
Number of successful extensions: 3918
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3917
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -